HapObject               Example Haplotype object
LD                      Example LD matrix
arith_mode              Mode utility function
build_bot_halfeyeplot   Bot hap-pheno raincloud plot
build_left_alleleplot   Left SNP-allele plot
build_left_posplot      Left SNP-position plot
build_mid_dotplot       Middle MG/hap dot plot
build_right_clusterplot
                        Right intra-cluster linkage plot
build_right_phenoplot   Right SNP-pheno phenoplot
build_summary_tables    Hap/MG summary tables
build_top_metaplot      Top metadata-hap bar plot
clustree_viz            Clustering tree
crosshap_viz            Visualize haplotypes
mean_na.rm              Mean utility function
metadata                Example Domestication metadata
pheno                   Example phenotype data
prepare_hap_umap        UMAP haplotype visualization helper
pseudo_haps             Identify haplotypes from clustered SNPs
read_LD                 Read LD correlation matrix to tibble
read_metadata           Read metadata to tibble
read_pheno              Read phenotype data to tibble
read_vcf                Read VCF to tibble
run_haplotyping         Cluster SNPs and identify haplotypes
run_hdbscan_haplotyping
                        Cluster SNPs with HDBSCAN and identify
                        haplotypes
tagphenos               Calculate SNP phenotypic associations
vcf                     Example VCF
