OWID.repos              function to define the OWID repos URLs
X.covid19.genomic.data
                        function to obtain sequencing data grom NCBI
                        Reference:
                        https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2
c19.NP_fasta.data       function to obtain FASTA seqs for nucleotides
                        or proteins from SARS-CoV-2
c19.NPs.data            function to obtain data for nucleotides or
                        proteins from SARS-CoV-2
c19.OWID.data           function to read data from OWID repos
c19.fasta.data          function to obtain FASTA sequence of the
                        SARS-CoV-2 virus
c19.genomic.data        function to obtain genomic data from
                        SARS-CoV-2019
c19.ptree.data          function to obtain "Tree of complete SARS-CoV-2
                        Sequences as obtained from NCBI"
c19.refGenome.data      function to obtain sequencing data grom NCBI
                        Reference:
                        https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2
consistency.check       function that determines whether there are
                        consistency issues within the data, such as,
                        anomalies in the cumulative quantities of the
                        data as reported by JHU/CCSEGIS
covid19.Canada.data     function to import data for Canada as reported
                        by Health Canada
                        https://health-infobase.canada.ca/src/data/covidLive/covid19.csv
covid19.JHU.data        function to read "live" data as reported by
                        JHU's CCSE repository
covid19.Toronto.data    function to import data from the city of
                        Toronto, ON - Canada as reported by the City of
                        Toronto OR Open Data Toronto
covid19.Toronto_OD.data
                        function to import data from the city of
                        Toronto, ON - Canada as reported by Open Data
                        Toronto
                        https://open.toronto.ca/dataset/covid-19-cases-in-toronto/
                        This dataset is updated WEEKLY.
covid19.Toronto_city.data
                        function to import data from the city of
                        Toronto, ON - Canada as reported by the City of
                        Toronto
                        https://www.toronto.ca/home/covid-19/covid-19-pandemic-data/
covid19.URL_csv.data    function to read CSV from URLs or local
                        replicas
covid19.US.data         function to read the TimeSeries US detailed
                        data
covid19.data            function to read "live" data from reported
                        covid19 cases
covid19.genomic.data    main master (wrapper) function to obtain
                        different types of genomic data for the
                        SARS-CoV-2 virus
covid19.testing.data    function to read data related to covid19
                        Testing from OWID repo
covid19.vaccination     function to read data related to covid19
                        vaccinations
covid19Explorer         covid19.analytics explorer dashboard
covid19dashboard        covid19.analytics explorer dashboard
data.checks             function to check for data integrity and data
                        consistency
estimateRRs             estimate rolling rates for a given geographical
                        location for an specific TS data
generate.SIR.model      function to generate a simple SIR
                        (Susceptible-Infected-Recovered) model based on
                        the actual data of the coivd19 cases
geographicalRegions     function to define continents and its
                        constituent countries
getFile                 auxiliary function to download files in a
                        protected fashion, i.e. against errors in the
                        downloading procedure
growth.rate             function to compute daily changes and "Growth
                        Rates" per location; "Growth Rates" defined as
                        the ratio between changes in consecutive days
integrity.check         function that determines whether there are
                        integrity issues within the datasets or changes
                        to the structure of the data as reported by
                        JHU/CCSEGIS
itrends                 function to visualize trends in daily changes
                        in time series data interactively
live.map                function to map cases in an interactive map
movingFn                generic fn that computes the "fn" on a moving
                        window
mrollingRates           function to compute a rolling fn (rate) of
                        multiple quantities from TS data, eg. fatality
                        and recovery rate
mtrends                 function to visualize different indicators for
                        trends in daily changes of cases reported as
                        time series data, for mutliple (or single)
                        locations
nullify.data            remove inconsistencies from data by removing
                        'suspicious' entries
pandemics.data          function to retrieve historical pandemics data
pandemics.loaddata      internal function to retrieve historical data
                        on pandemics
plt.SIR.model           function to plot the results from the SIR model
                        fn
preProcessingData       auxiliary function to pre-process data per
                        geographical location
red.devel.ver           function to redirect users to install devel
                        version from github
report.Tor              function to obtain main indicators from Toronto
                        data
report.summary          function to summarize the current situation,
                        will download the latest data and summarize the
                        top provinces/cities per case
rollingRate             function to compute a rolling fn of a TS data
single.trend            function to visualize different indicators for
                        trends in daily changes of cases reported as
                        time series data
sweep.SIR.models        function to perform a sweep of models and
                        generate values of R0
totals.plt              function to plot total number of cases per day
                        for different groups
tots.per.location       function to compute totals per location
