R: Proportional Testing for Colocalisation Analysis

# Proportional Testing for Colocalisation Analysis

## Documentation for package ‘colocPropTest’ version 0.9.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

adjust_LD | adjust LD for variable sample size
estprop | Proportional colocalisation testing supplying only a pair of regression coefficients.
estprop_slow | Proportional colocalisation testing
keep_from_S | keep snp subset of coloc dataset
lp | logp
marg_with_V | create variance-covariance matrix for pair of marginal beta + vbeta, given estimate of r between snps
nform | Helper function to adjust LD parameter r for differential sample size between snps
plot_ellipses | draw two ellipses
run_proptests | run proportional tests on extreme subset of snp pairs from two coloc style datasets. Of all functions in this package, this is the main one that should be used.
tag | Derive tag SNPs using heirarchical clustering
tester_marg | run proportional test directly on marginal test stats from coloc datasets