CographLayout           CographLayout R6 Class
CographNetwork          CographNetwork R6 Class
CographTheme            CographTheme R6 Class
abbrev_label            Abbreviate Labels
aggregate_layers        Aggregate Layers
aggregate_weights       Aggregate Edge Weights
as_cograph              Convert to Cograph Network
as_mcml                 Convert to mcml
as_tna                  Convert cluster_summary to tna Objects
assortativity           Degree Assortativity Coefficient
assortativity_attribute
                        Attribute Assortativity (Homophily)
build_mcml              Build MCML from Raw Transition Data
centrality              Calculate Network Centrality Measures
centrality_alpha        Alpha (Katz) Centrality
centrality_authority    HITS Authority and Hub Scores
centrality_average_distance
                        Average Distance Centrality
centrality_barycenter   Barycenter Centrality
centrality_betweenness
                        Betweenness Centrality
centrality_bottleneck   Bottleneck Centrality
centrality_bridging     Bridging Centrality
centrality_brokerage_coordinator
                        Gould-Fernandez Brokerage — Coordinator Role
centrality_brokerage_gatekeeper
                        Gould-Fernandez Brokerage — Gatekeeper Role
centrality_brokerage_itinerant
                        Gould-Fernandez Brokerage — Itinerant
                        (Consultant) Role
centrality_brokerage_liaison
                        Gould-Fernandez Brokerage — Liaison Role
centrality_brokerage_representative
                        Gould-Fernandez Brokerage — Representative Role
centrality_centroid     Centroid Value
centrality_closeness    Closeness Centrality
centrality_closeness_vitality
                        Closeness Vitality
centrality_clusterrank
                        ClusterRank Centrality
centrality_communicability
                        Communicability Centrality
centrality_communicability_betweenness
                        Communicability Betweenness Centrality
centrality_constraint   Burt's Constraint
centrality_coreness     K-Core Decomposition (Coreness)
centrality_cross_clique
                        Cross-Clique Connectivity
centrality_current_flow_betweenness
                        Current Flow Betweenness Centrality
centrality_current_flow_closeness
                        Current Flow Closeness Centrality
centrality_dangalchev   Dangalchev Closeness Centrality
centrality_decay        Decay Centrality
centrality_degree       Degree Centrality
centrality_diffusion    Diffusion Centrality
centrality_diversity    Diversity Centrality
centrality_dmnc         Density of Maximum Neighborhood Component
                        (DMNC)
centrality_eccentricity
                        Eccentricity
centrality_effective_size
                        Effective Size (Burt's)
centrality_eigenvector
                        Eigenvector Centrality
centrality_entropy      Entropy Centrality
centrality_expected     Expected Centrality
centrality_expected_influence_1
                        Expected Influence (one-step)
centrality_expected_influence_2
                        Expected Influence (two-step)
centrality_flow_betweenness
                        Flow Betweenness Centrality
centrality_gateway      Gateway Coefficient
centrality_generalized_closeness
                        Generalized Closeness Centrality
centrality_gilschmidt   Gil-Schmidt Power Index
centrality_harary       Harary Centrality
centrality_harmonic     Harmonic Centrality
centrality_hubbell      Hubbell Centrality
centrality_information
                        Information Centrality (Stephenson-Zelen)
centrality_integration
                        Integration Centrality
centrality_katz         Katz Centrality
centrality_kreach       Geodesic K-Path Centrality
centrality_lac          Local Average Connectivity (LAC)
centrality_laplacian    Laplacian Centrality
centrality_leaderrank   LeaderRank Centrality
centrality_leverage     Leverage Centrality
centrality_lin          Lin Centrality
centrality_load         Load Centrality
centrality_lobby        Lobby Index (H-Index of Neighborhood)
centrality_local_bridging
                        Local Bridging Centrality
centrality_markov       Markov Centrality
centrality_mnc          Maximum Neighborhood Component (MNC)
centrality_pagerank     PageRank Centrality
centrality_pairwisedis
                        Pairwise Disconnectivity (Potapov et al. 2008)
centrality_participation
                        Participation Coefficient
centrality_percolation
                        Percolation Centrality
centrality_power        Bonacich Power Centrality
centrality_prestige_domain
                        Domain Prestige
centrality_prestige_domain_proximity
                        Domain Proximity Prestige
centrality_radiality    Radiality Centrality
centrality_random_walk
                        Random Walk Centrality
centrality_reaching_local
                        Local Reaching Centrality (Mones, Vicsek &
                        Vicsek 2012)
centrality_residual_closeness
                        Residual Closeness Centrality
centrality_salsa        SALSA Authority Centrality
centrality_semilocal    Semi-Local Centrality
centrality_strength     Strength Centrality (Weighted Degree)
centrality_stress       Stress Centrality
centrality_subgraph     Subgraph Centrality
centrality_topological_coefficient
                        Topological Coefficient
centrality_transitivity
                        Local Transitivity (Clustering Coefficient)
centrality_voterank     VoteRank Centrality
centrality_wiener       Wiener Index Centrality
centrality_within_module_z
                        Within-Module Degree Z-Score
centralization          Centralization index
cluster_quality         Cluster Quality Metrics
cluster_significance    Test Significance of Community Structure
cluster_summary         Cluster Summary Statistics
cograph                 Create a Network Visualization
color_communities       Color Nodes by Community
communities             Community Detection
community_consensus     Consensus Community Detection
community_edge_betweenness
                        Edge Betweenness Community Detection
community_fast_greedy   Fast Greedy Community Detection
community_fluid         Fluid Communities Detection
community_infomap       Infomap Community Detection
community_label_propagation
                        Label Propagation Community Detection
community_leading_eigenvector
                        Leading Eigenvector Community Detection
community_leiden        Leiden Community Detection
community_louvain       Louvain Community Detection
community_optimal       Optimal Community Detection
community_sizes         Get Community Sizes
community_spinglass     Spinglass Community Detection
community_walktrap      Walktrap Community Detection
compare_communities     Compare Community Structures
core_periphery          Detect Core-Periphery Structure
degree_distribution     Degree Distribution Visualization
detect_communities      Detect Communities in a Network
disparity_filter        Disparity Filter
dispersion              Dispersion (Backstrom-Kleinberg 2014)
edge_centrality         Calculate Edge Centrality Measures
edge_reciprocity        Edge Reciprocity
estrada_index           Estrada Index
filter_edges            Filter Edges by Metadata
filter_nodes            Filter Nodes by Metadata or Centrality
fit_degree_distribution
                        Fit Statistical Distributions to Degree
                        Sequence
from_qgraph             Convert a qgraph object to cograph parameters
from_tna                Convert a tna object to cograph parameters
get_data                Get Original Data from Cograph Network
get_edge_list           Extract Raw Edge List from TNA Model
get_edges               Get Edges from Cograph Network
get_groups              Get Node Groups from Cograph Network
get_labels              Get Labels from Cograph Network
get_layout              Get a Registered Layout
get_meta                Get Metadata from Cograph Network
get_nodes               Get Nodes from Cograph Network
get_shape               Get a Registered Shape
get_source              Get Source Type from Cograph Network
get_theme               Get a Registered Theme
ggplot_robustness       Compare Network Robustness (ggplot2)
group_centrality        Group Centrality (Everett-Borgatti 1999)
hai_datasets            Human-AI Interaction Coding Sequences
is_bipartite            Check if a Matrix Could Be Bipartite
is_directed             Check if Network is Directed
is_tna_network          Check if Network is TNA-based
k_shortest_paths        Find K Shortest Loopless Paths (Yen's
                        Algorithm)
layer_degree_correlation
                        Degree Correlation Between Layers
layer_similarity        Layer Similarity
layer_similarity_matrix
                        Pairwise Layer Similarities
layout_circle           Circular Layout
layout_groups           Group-based Layout
layout_oval             Oval Layout
layout_spring           Fruchterman-Reingold Spring Layout
list_layouts            List Available Layouts
list_palettes           List Available Color Palettes
list_shapes             List Available Shapes
list_svg_shapes         List Registered SVG Shapes
list_themes             List Available Themes
membership              Get Community Membership
motifs                  Network Motif Analysis
n_communities           Get Number of Communities
n_edges                 Get Number of Edges
n_nodes                 Get Number of Nodes
neighborhood_overlap    Neighborhood Overlap (Jaccard) for Each Edge
network_bridges         Bridge Edges
network_clique_size     Largest Clique Size
network_cut_vertices    Cut Vertices (Articulation Points)
network_girth           Network Girth (Shortest Cycle Length)
network_global_efficiency
                        Global Efficiency
network_local_efficiency
                        Local Efficiency
network_radius          Network Radius
network_rich_club       Rich Club Coefficient
network_small_world     Small-World Coefficient (Sigma)
network_summary         Network-Level Summary Statistics
network_vertex_connectivity
                        Network Vertex Connectivity
nodes                   Get Nodes from Cograph Network (Deprecated)
overlay_communities     Overlay Community Blobs on a Network Plot
palette_blues           Blues Palette
palette_colorblind      Colorblind-friendly Palette
palette_diverging       Diverging Palette
palette_pastel          Pastel Palette
palette_rainbow         Rainbow Palette
palette_reds            Reds Palette
palette_viridis         Viridis Palette
palettes                Color Palettes
panel_layout            Configure a custom multi-panel layout
plot.cograph_cluster_significance
                        Plot Cluster Significance
plot.cograph_communities
                        Plot Community Structure
plot.cograph_core_periphery
                        Plot Core-Periphery Structure
plot.cograph_degree_fit
                        Plot method for cograph_degree_fit
plot.cograph_motif_analysis
                        Plot Motif Analysis Results
plot.cograph_motifs     Plot Network Motifs
plot.cograph_network    Plot cograph_network Object
plot.cograph_rich_club
                        Plot Rich Club Results
plot.cograph_vulnerability
                        Plot Node Vulnerability
plot.tna_bootstrap      Plot Bootstrap Results
plot.tna_disparity      Plot Disparity Filter Result
plot_alluvial           Plot Alluvial Diagram
plot_centrality         Plot Centrality
plot_centrality_compare
                        Plot Centrality Comparison
plot_centrality_distribution
                        Plot Centrality Distribution
plot_centrality_heatmap
                        Plot Centrality Heatmap
plot_chord              Chord Diagram
plot_compare            Plot Network Difference
plot_comparison_heatmap
                        Plot Comparison Heatmap
plot_degree_correlation
                        Plot Degree-Degree Correlation
plot_edge_diff_forest   Forest Plot for Bootstrap Edge Differences
plot_edge_weights       Plot Edge Weight Distribution
plot_heatmap            Plot Network as Heatmap
plot_htna               Plot Heterogeneous TNA Network (Multi-Group
                        Layout)
plot_mcml               Plot Multi-Cluster Multi-Layer Network
plot_mixed_network      Plot Mixed Network
plot_ml_heatmap         Multilayer Network Heatmap
plot_mlna               Multilevel Network Visualization
plot_motifs             Plot a motif/subgraph result
plot_mtna               Multi-Cluster TNA Network Plot
plot_net_bootstrap_group
                        Plot a Group Bootstrap Result
plot_net_stability      Plot Centrality Stability Results
plot_netobject_group    Plot a Group of Nestimate netobjects
plot_netobject_ml       Plot a Multilevel Nestimate netobject
plot_network_evolution
                        Plot Network Evolution (Small Multiples)
plot_robustness         Plot Network Robustness
plot_simplicial         Simplicial Complex Visualization
plot_temporal           Temporal Network Prism (3D Glass Box)
plot_tna                TNA-Style Network Plot (qgraph Compatible)
plot_trajectories       Plot Individual Trajectories
plot_transitions        Plot Transitions Between States
print.cograph_communities
                        Print Community Structure
print.cograph_degree_fit
                        Print method for cograph_degree_fit
print.cograph_network   Print cograph_network Object
project_bipartite       Project Bipartite Network to One-Mode
reaching_global         Global Reaching Centrality (Mones, Vicsek &
                        Vicsek 2012)
register_layout         Register a Custom Layout
register_shape          Register a Custom Shape
register_svg_shape      Register Custom SVG Shape
register_theme          Register a Custom Theme
render-ggplot           ggplot2 Conversion
render-grid             Grid Rendering
rich_club               Rich Club Coefficient
rich_club_local         Local Rich Club Score
robustness              Network Robustness Analysis
robustness_auc          Calculate Area Under Robustness Curve (AUC)
robustness_summary      Summary of Robustness Analysis
select_bridges          Select Bridge Edges
select_component        Select Connected Component
select_edges            Select Edges with Lazy Computation
select_edges_between    Select Edges Between Node Sets
select_edges_involving
                        Select Edges Involving Nodes
select_neighbors        Select Node Neighbors (Ego Network)
select_nodes            Select Nodes with Lazy Centrality Computation
select_top              Select Top N Nodes by Centrality
select_top_edges        Select Top N Edges
set_edges               Set Edges in Cograph Network
set_groups              Set Node Groups
set_layout              Set Layout in Cograph Network
set_nodes               Set Nodes in Cograph Network
shortest_paths          Compute Shortest Path Distances
simmelian_strength      Simmelian Strength (Triangle Count per Edge)
simplify                Simplify a Network
sn_edges                Set Edge Aesthetics
sn_ggplot               Convert Network to ggplot2
sn_layout               Apply Layout to Network
sn_nodes                Set Node Aesthetics
sn_palette              Apply Color Palette to Network
sn_save                 Save Network Visualization
sn_save_ggplot          Save as ggplot2
sn_theme                Apply Theme to Network
soplot                  Plot Cograph Network
splot.group_tna_permutation
                        Plot Group Permutation Test Results
splot.net_bootstrap     Plot Nestimate Bootstrap Results
splot.tna_disparity     Plot Disparity Results with splot
splot.tna_permutation   Plot Permutation Test Results
student_interactions    Student Interaction Edge List
subgraphs               Extract Specific Motif Instances (Subgraphs)
summarize_network       Summarize Network by Clusters
summary.cograph_network
                        Summary of cograph_network Object
supra_adjacency         Supra-Adjacency Matrix
supra_interlayer        Extract Inter-Layer Block
supra_layer             Extract Layer from Supra-Adjacency Matrix
theme_cograph_classic   Classic Theme
theme_cograph_colorblind
                        Colorblind-friendly Theme
theme_cograph_dark      Dark Theme
theme_cograph_gray      Grayscale Theme
theme_cograph_minimal   Minimal Theme
theme_cograph_nature    Nature Theme
theme_cograph_viridis   Viridis Theme
themes-builtin          Built-in Themes
to_data_frame           Export Network as Edge List Data Frame
to_igraph               Convert Network to igraph Object
to_matrix               Convert Network to Adjacency Matrix
to_network              Convert Network to statnet network Object
trophic_incoherence     Trophic Incoherence Parameter
unregister_svg_shape    Unregister SVG Shape
verify_with_igraph      Verify Against igraph
vulnerability           Node Vulnerability
