R: General Utility Functions for Analysis of Clinical Data

# General Utility Functions for Analysis of Clinical Data

## Documentation for package ‘clinUtils’ version 0.2.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

checkVarInData | Check if specified variables are in the data. If they are not, they are removed from specified variables and a message is printed.
clinColors | Colors of 'clinUtils'
clinLinetypes | Linetypes of 'clinUtils'
clinShapes | Shapes of 'clinUtils'
clinShapesText | Shapes of 'clinUtils' as text
clinUtils-palette | Parameters for all palette functions for clinical visualizations.
colorPaletteNRIND | Color palette for a standard CDISC Normal/Reference Range Indicator.
compareDiff | Get differences between two data.frames
compareTables | Compare tables
comparisonTables-common-args | General parameters used for the comparison table functionality
convertToDatatable | Convert to data.table
convertToDateTime | Convert character vector to date/time object
dataADaMCDISCP01 | Example of ADaM datasets from the CDISC original Pilot 01 study
dataSDTMCDISCP01 | Example of SDTM datasets from the CDISC original Pilot 01 study
exportDiffData | Export the 'diff.data' object from 'compareDiff' to a user-friendly format
formatDetailsComparison | Format details comparison
formatDTBarVar | Format a variable in a 'datatable' as a barplot.
formatLabel | Concatenate and format text strings to a label
formatLabelChunk | Concatenate and format text strings to a chunk label
formatLongLabel | Format a variable with long labels
formatTableLabel | Concatenate and format text strings to a label of a table
formatVarForPlotLabel | Format parameter variable to be displayed in the labels of a plot
getClinDT | Create an interactive table to display clinical data
getClinDTButtons | Get a default set of buttons to be included in the interactive table for clinical data.
getColorPalette | Get a color palette for clinical visualizations.
getLabelParamcd | Get label for a parameter code
getLabelVar | Get label for a variable of the dataset
getLabelVars | Get label of the variables in SAS dataset(s)
getLinetypePalette | Get a linetype palette for clinical visualizations.
getPaletteCDISC | Get standard palette for typical CDISC variables.
getSetDiff | Get additions/removals
getShapePalette | Get a shape palette for clinical visualizations.
knitPrintListObjects | Include a list of objects in a knitr document
knitPrintListPlots | Include a list of plots in a knitr document
loadDataADaMSDTM | Load data from ADaM/SDTM file(s).
mergeDiffWithData | Merge the 'diff.data' object from 'compareDiff' with the original 'newData' or 'oldData'.
mergeInputDiff | Custom merge of difference data with input data
reorderColumns | Function for reordering columns
roundHalfUp | Round a number with 'rounding up' strategy for rounding off a 5
roundHalfUpTextFormat | Round a number with 'round-up' strategy for rounding off a 5 in text format
shapePaletteNRIND | Shape palette for a standard CDISC Normal/Reference Range Indicator.
simpleCap | Capitalize the first letter of a word/sentence.