AmpSim                  Amplification curve simulator
AmpSim.gui              Amplification Curve Simulation Graphical User
                        Interface
C126EG595               qPCR Experiment for the Amplification of HPRT1
                        Using the Bio-Rad iQ5 thermo cycler
C126EG685               qPCR Experiment for the Amplification of HPRT1
                        Using the Roche Light Cycler 1.5
C127EGHP                qPCR Experiment for the Amplification of MLC-2v
                        Using the Roche Light Cycler 1.5
C17                     Helicase Dependent Amplification of HPRT1 at
                        Different Temperatures using the 'VideoScan'
                        Platform 2.0
C316.amp                qPCR Experiment for the Amplification of adk
                        Using the Bio-Rad iQ5 thermo cycler
C316.melt.hr            Melting Curves (resolution: 0.2 degrees Celsius
                        / step) for the Gene adk Using the Bio-Rad iQ5
                        thermo cycler
C316.melt.lr            Melting Curves (resolution: 0.5 degrees Celsius
                        / step) for the Gene adk Using the Bio-Rad iQ5
                        thermo cycler
C317.amp                qPCR Experiment for the Amplification of adk
                        Using the Bio-Rad CFX96 thermo cycler
C317.melt.hr            Melting Curves (resolution: 0.1 degrees Celsius
                        / step) for the Gene adk Using the Bio-Rad
                        CFX96 thermo cycler
C317.melt.lr            Melting Curves (resolution: 0.5 degrees Celsius
                        / step) for the Gene adk Using the Bio-Rad
                        CFX96 thermo cycler
C54                     qPCR Experiment for the amplification of MLC-2v
                        using the 'VideoScan' heating/cooling-unit
C60.amp                 qPCR Experiment for the Amplification of MLC-2v
                        and Vimentin (as decadic dilutions) Using the
                        Roche Light Cycler 1.5
C60.melt                Melt Curves MLC-2v and Vimentin for the qPCR
                        Experiment C60.amp Using the Roche Light Cycler
                        1.5
C67                     Helicase Dependent Amplification of HPRT1 with
                        different input DNA quantities using the
                        Bio-Rad iQ5 thermo cycler
C81                     Helicase Dependent Amplification of pCNG1 using
                        the 'VideoScan' Platform
C85                     Helicase Dependent Amplification of Vimentin
                        using the 'VideoScan' Platform
CD74                    Quantitative PCR with a hydrolysis probe and
                        DNA binding dye
CD75                    Helicase Dependent Amplification in the
                        'VideoScan' 'HCU'
CPP                     Curve Pre-processor
Eff1000                 Highly Replicate Number Amplification Curves
Eff625                  Highly Replicate Number Amplification Curves
Eff750                  Highly Replicate Number Amplification Curves
Eff875                  Highly Replicate Number Amplification Curves
LAMP                    real-time loop-mediated isothermal
                        amplification (LAMP) by Tanner et al. (2012)
MFIaggr                 Multiple comparison of the cycle dependent
                        variance of the fluorescence
MFIaggr.gui             Multiple Comparison of the Cycle Dependent
                        Variance - Graphical User Interface
RPA                     Recombinase polymerase amplification (RPA) by
                        Lutz et al.(2009)
VIMCFX96_60             Amplification Reaction Using the Bio-Rad CFX96
VIMCFX96_69             Amplification Reaction Using the Bio-Rad CFX96
VIMCFX96_meltcurve      Melting Curve Measured with the Bio-Rad CFX96
VIMiQ5_595              Amplification Reaction Using the Bio-Rad iQ5
VIMiQ5_685              Amplification Reaction Using the Bio-Rad iQ5
VIMiQ5_melt             Melting Curve Measured with the Bio-Rad iQ5
amptest                 Class '"amptest"'
amptester               Amplification test
amptester.gui           Amplification Test Graphical User Interface
bg                      Class '"bg"'
bg.max                  Simple function to detect and correct the
                        background range
capillaryPCR            capillary convective PCR
chipPCR-package         Toolkit of functions to pre-process
                        amplification data
chipPCR.datasets        Overview for data sets of the 'chipPCR' package
der                     Class '"der"'
eff                     Class '"eff"'
effcalc                 Analysis of the amplification efficiency
fixNA                   Impute missing values into a column of
                        amplification data
humanrater              humanrater, a graphical interface to rate
                        curves
inder                   Interpolate derivatives
lm.coefs                Compute linear model coefficients
normalizer              Normalize data
plot.bg                 Plot 'bg' objects
plot.der                Plot 'der' objects
plot.eff                Plot 'eff' objects
plot.refMFI             Plot 'refMFI' objects
plotCurves              Plot Curves in an Orthogonal Matrix
refMFI                  Class '"refMFI"'
rounder                 Round der objects
smoother                Wrapper for Several Smoothers of Amplification
                        Data
summary-der             Summary 'der' objects
summary.bg              Summary 'bg' objects
summary.refMFI          Summary 'refMFI' objects
th                      Class '"th"'
th.cyc                  Threshold Cycle
