# Generated by roxygen2: do not edit by hand

export(add.covariates)
export(add.fragment.coordinates)
export(bedtools.installed)
export(check.model.numerical.fit)
export(chicane)
export(combine.replicates)
export(compare.replicates)
export(convert.hicup.digest.bed)
export(convert.standard.format)
export(convert.to.one.based)
export(create.locus.plot)
export(create.modelfit.plot)
export(distance.bin)
export(distance.split)
export(fill.in.zeroes)
export(fill.in.zeros)
export(filter.fragments)
export(fit.model)
export(get.combination.count)
export(get.components)
export(get.distance)
export(get.id.components)
export(get.interaction.id)
export(get.trans.counts)
export(multiple.testing.correct)
export(prepare.data)
export(read.bed)
export(stratified.enrichment.sample)
export(test.enrichment)
import(data.table)
import(gamlss)
import(gamlss.tr)
importFrom(bedr,bedr.sort.region)
importFrom(foreach,"%dopar%")
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,title)
importFrom(iterators,icount)
importFrom(stats,cor.test)
importFrom(stats,logLik)
