add-caugi_plot-caugi_plot
                        Compose Plots Horizontally
adjustment_set          Compute an adjustment set
aid                     Adjustment Identification Distance
all_adjustment_sets_admg
                        Get all valid adjustment sets in an ADMG
all_backdoor_sets       Get all backdoor sets up to a certain size.
ancestors               Get ancestors of nodes in a 'caugi'
anteriors               Get anteriors of nodes in a 'caugi'
as_adjacency            Convert a caugi to an adjacency matrix
as_bnlearn              Convert a caugi to a bnlearn network
as_caugi                Convert to a 'caugi'
as_dagitty              Convert a caugi to a dagitty graph
as_igraph               Convert a caugi to an igraph object
build                   Build the 'caugi' graph
caugi                   Create a 'caugi' from edge expressions.
caugi_default_options   Default options for caugi
caugi_deserialize       Deserialize caugi Graph from JSON String
caugi_dot               S7 Class for DOT Export
caugi_export            S7 Base Class for Caugi Exports
caugi_graphml           S7 Class for GraphML Export
caugi_layout            Compute Graph Layout
caugi_layout_bipartite
                        Bipartite Graph Layout
caugi_layout_circle     Circle Layout
caugi_layout_fruchterman_reingold
                        Fruchterman-Reingold Force-Directed Layout
caugi_layout_kamada_kawai
                        Kamada-Kawai Stress Minimization Layout
caugi_layout_sugiyama   Sugiyama Hierarchical Layout
caugi_layout_tiered     Tiered Graph Layout
caugi_mermaid           S7 Class for Mermaid Export
caugi_options           Get or set global options for caugi
caugi_plot              S7 Class for caugi Plot
caugi_serialize         Serialize caugi Graph to JSON String
caugi_verbs             Manipulate nodes and edges of a 'caugi'
children                Get children of nodes in a 'caugi'
condition_marginalize   Marginalize and/or condition on variables in an
                        ancestral graph (AG)
d_separated             Are X and Y d-separated given Z?
dag_from_pdag           Extend a PDAG to a DAG using the Dor-Tarsi
                        Algorithm
descendants             Get descendants of nodes in a 'caugi'
districts               Get districts (c-components) of an ADMG or AG
divide-caugi_plot-caugi_plot
                        Compose Plots Vertically
edge_types              Get the edge types of a 'caugi'.
edges                   Get edges of a 'caugi'.
exogenize               Exogenize a graph
exogenous               Get all exogenous nodes in a 'caugi'
export-classes          Export Format Classes
format-caugi            Caugi Native Format Serialization
format-dot              DOT Format Export and Import
format-graphml          GraphML Format Export and Import
format-mermaid          Mermaid Format Export
generate_graph          Generate a 'caugi' using Erdős-Rényi.
hd                      Hamming Distance
is_acyclic              Is the 'caugi' acyclic?
is_admg                 Is the 'caugi' graph an ADMG?
is_ag                   Is the 'caugi' graph an AG?
is_caugi                Is it a 'caugi' graph?
is_cpdag                Is the 'caugi' graph a CPDAG?
is_dag                  Is the 'caugi' graph a DAG?
is_empty_caugi          Is the 'caugi' graph empty?
is_mag                  Is the 'caugi' graph a MAG?
is_mpdag                Is the 'caugi' graph an MPDAG?
is_pdag                 Is the 'caugi' graph a PDAG?
is_simple               Is the 'caugi' graph simple?
is_ug                   Is the 'caugi' graph an UG?
is_valid_adjustment_admg
                        Is a set a valid adjustment set in an ADMG?
is_valid_backdoor       Is a backdoor set valid?
knit_print.caugi_export
                        Knit Print Method for caugi_export
latent_project          Project latent variables from a DAG to an ADMG
length                  Length of a 'caugi'
m_separated             M-separation test for AGs and ADMGs
markov_blanket          Get Markov blanket of nodes in a 'caugi'
meek_closure            Apply Meek closure to a PDAG
minimal_separator       Compute a minimal separator
moralize                Moralize a DAG
mutate_caugi            Mutate 'caugi' class
neighbors               Get neighbors of nodes in a 'caugi'
nodes                   Get nodes or edges of a 'caugi'
normalize_latent_structure
                        Normalize latent structure in a DAG
parents                 Get parents of nodes in a 'caugi'
plot                    Create a caugi Graph Plot Object
posteriors              Get posteriors of nodes in a 'caugi'
print                   Print a 'caugi'
read_caugi              Read caugi Graph from File
read_graphml            Read GraphML File to caugi Graph
register_caugi_edge     Register a new edge type in the global
                        registry.
registry                'caugi' edge registry
same_nodes              Same nodes?
shd                     Structural Hamming Distance
simulate_data           Simulate data from a 'caugi' DAG.
skeleton                Get the skeleton of a graph
spouses                 Get spouses (bidirected neighbors) of nodes in
                        an ADMG
subgraph                Get the induced subgraph
to_dot                  Export caugi Graph to DOT Format
to_graphml              Export caugi Graph to GraphML Format
to_mermaid              Export caugi Graph to Mermaid Format
topological_sort        Get a topological ordering of a DAG
write_caugi             Write caugi Graph to File
write_dot               Write caugi Graph to DOT File
write_graphml           Write caugi Graph to GraphML File
write_mermaid           Write caugi Graph to Mermaid File
