R: Analyses of Cancer Gene Interaction

# Analyses of Cancer Gene Interaction

## Documentation for package ‘cancerGI’ version 1.0.1

- DESCRIPTION file

## Help Pages

computeSmallWorldness | Compute smallworldness of a graph
computeSurvivalPValueForGenePairSet.output | Survival analysis for pairs of genes
computeSurvivalPValueGenePairAll.output | Survival analysis for pairs of genes (with matched individuals)
computeSurvivalPValueOneGenePair | Survival analysis for one pair of genes
computeSurvivalPValueOneGenePair.output | Write results from survival analysis to output for one pair of genes
constructDesignMatrix | Generate a design matrix from raw RNAi data.
mutations | Genetic mutation data in patients.
processDataMutSurv | Find matched individuals in mutation and survival data
RNAi | Molecular phenotypes from single and double knockdowns in RNAi screen
survival | Patient survival data.
tested_pairs | Gene pairs tested in the double knockdown assay.
testMutationalPatternAll.wrapper | Compute the p and q values of all pairwise gene mutation patterns