R: Calculate Outbreak Probabilities for a Branching Process Model

# Calculate Outbreak Probabilities for a Branching Process Model

## Documentation for package ‘branchingprocess’ version 0.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

pExtinct | Probability that one initial case leads to an outbreak that eventually dies out (stochastic extinction)
pFinalSize | Final outbreak size probability
pFinalSizeAndGen | Joint probability of outbreak final size and number of transmission generations
pFinalSizeAndGenSwitch1 | Joint probability of outbreak final size and number of transmission generations with offspring distribution parameters switched after generation one
pFinalSizeSwitch1 | Probability of final outbreak size with offspring distribution parameters switched after generation one
pGen | Probability that one initial case leads to an outbreak lasting less than g generations of transmission.
pGenSwitch1 | Probability that one initial case leads to an outbreak lasting less than g generations of transmission, with offspring distribution parameters switched after generation one.
pNextGenSize | Probability of y total transmission directly from x independent infected individuals
pSizeAtGen | Probability that n initial cases lead to an outbreak that lasts at least g generations of transmission AND has exactly j total cases after generation g
pSizeAtGenSwitch1 | Probability that n initial cases lead to an outbreak that lasts at least g generations of transmission AND has exactly j total cases after generation g, with offspring distribution parameters switched after generation one