# bioseq 0.1.5

* Fix issue with upcoming release of stringr.

# bioseq 0.1.4

## Minor changes

* Add arguments to `write_fasta()` to control line and block lengths.

* Fix warning message when a non-valid character is automatically replaced by X with AA.

* On CRAN request, fix tags/attributes for HTML documentation.

# bioseq 0.1.3

## Minor changes

* Add support for fuzzy matching in `seq_detect_pattern()` and `seq_crop_pattern()`.

* Fixed missing output in `seq_spellout()` for `collapse = NULL`.

# bioseq 0.1.2

## Minor changes

* Use `getOption()` instead of `options()` in function arguments (Functions `aliview`, `seaview`, `print_sequences`, `print.bioseq_dna`, `print.bioseq_rna` and `print.bioseq_aa`).

## Bug fixes

* Fix bug when importing fasta with > characters in sequence names.

* Fix bug when exporting fasta (`write_fasta`) with NA sequences.

## Documentation improvements

* On CRAN request, add a reference to Keck (2020) in description.

* New logo.

* Add CITATION file.


# bioseq 0.1.1

## New features

* New system to disable colors in the console when printing sequences using
global options: `options(bioseq.color = "none")`.

* New system to set GUI paths for `seaview()` and `aliview()` using global
options (`bioseq.seaview.exec` and `bioseq.aliview.exec`).

## Bug fixes

* Fix bug with names when named biological sequences are provided to
functions that return a list (`seq_extract_pattern`, `seq_split_pattern`,
`seq_split_kmer`).

## Documentation improvements

* Documentation of `seaview()` and `aliview()` was improved to explain
the exec arguments.



# bioseq 0.1.0

* First version
