Package: bioseq
Type: Package
Title: A Toolbox for Manipulating Biological Sequences
Version: 0.1.5
Authors@R: 
    c(person(given = "Francois",
             family = "Keck",
             role = c("aut", "cre", "cph"),
             email = "francois.keck@gmail.com",
             comment = c(ORCID = "0000-0002-3323-4167"))
    )
Description: Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences).
    Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>.
    Provides a collection of functions to perform biological conversion among classes
    (transcription, translation) and basic operations on sequences
    (detection, selection and replacement based on positions or patterns).
    The package also provides functions to import and export sequences from and to other package formats.
License: GPL-3
URL: https://fkeck.github.io/bioseq/
BugReports: https://github.com/fkeck/bioseq/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.1.0)
Imports: methods, vctrs, tibble, ape, crayon, dplyr, pillar, stringi,
        stringr, stringdist, readr, rlang
Suggests: knitr, rmarkdown, testthat (>= 2.1.0), covr
VignetteBuilder: knitr
RoxygenNote: 7.2.1
NeedsCompilation: no
Packaged: 2025-09-29 15:56:52 UTC; francois
Author: Francois Keck [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-3323-4167>)
Maintainer: Francois Keck <francois.keck@gmail.com>
Repository: CRAN
Date/Publication: 2025-09-29 16:20:08 UTC
Built: R 4.6.0; ; 2026-04-29 12:19:10 UTC; unix
