as_bioregion_pairwise   Convert a matrix or list of matrices to a
                        bioregion (dis)similarity object
betapart_to_bioregion   Convert betapart dissimilarity to bioregion
                        dissimilarity (DEPRECATED)
bind_pairwise           Combine and enrich bioregion (dis)similarity
                        object(s)
bioregion_colors        Add color palettes to bioregion cluster objects
bioregion_metrics       Calculate metrics for bioregions
bioregionalization_metrics
                        Calculate metrics for one or several
                        bioregionalizations
compare_bioregionalizations
                        Compare cluster memberships among multiple
                        bioregionalizations
cut_tree                Cut a hierarchical tree
dissimilarity           Compute dissimilarity metrics (beta-diversity)
                        between sites based on species composition
dissimilarity_to_similarity
                        Convert dissimilarity metrics to similarity
                        metrics
exportGDF               Export a network to GDF format for Gephi
                        visualization
find_optimal_n          Search for an optimal number of clusters in a
                        list of bioregionalizations
fishdf                  Spatial distribution of fish in Europe
                        (data.frame)
fishmat                 Spatial distribution of fish in Europe
                        (co-occurrence matrix)
fishsf                  Spatial distribution of fish in Europe
hclu_diana              Divisive hierarchical clustering based on
                        dissimilarity or beta-diversity
hclu_hierarclust        Hierarchical clustering based on dissimilarity
                        or beta-diversity
hclu_optics             OPTICS hierarchical clustering algorithm
install_binaries        Download, unzip, check permissions, and test
                        the bioregion's binary files
map_bioregions          Create a map of bioregions
mat_to_net              Create a data.frame from a contingency table
net_to_mat              Create a contingency table from a data.frame
netclu_beckett          Community structure detection in weighted
                        bipartite networks via modularity optimization
netclu_greedy           Community structure detection via greedy
                        optimization of modularity
netclu_infomap          Infomap community finding
netclu_labelprop        Finding communities based on propagating labels
netclu_leadingeigen     Finding communities based on the leading
                        eigenvector of the community matrix
netclu_leiden           Finding communities using the Leiden algorithm
netclu_louvain          Louvain community finding
netclu_oslom            OSLOM community finding
netclu_walktrap         Community structure detection via short random
                        walks
nhclu_affprop           Non-hierarchical clustering: Affinity
                        Propagation
nhclu_clara             Non-hierarchical clustering: CLARA
nhclu_clarans           Non-hierarchical clustering: CLARANS
nhclu_dbscan            Non-hierarchical clustering: DBSCAN
nhclu_kmeans            Non-hierarchical clustering: K-means analysis
nhclu_pam               Non-hierarchical clustering: Partitioning
                        Around Medoids
similarity              Compute similarity metrics between sites based
                        on species composition
similarity_to_dissimilarity
                        Convert similarity metrics to dissimilarity
                        metrics
site_species_metrics    Calculate metrics for sites and species
                        relative to bioregions and chorotypes
site_species_subset     Extract a subset of sites or species from a
                        'bioregion.clusters' object
vegedf                  Spatial distribution of Mediterranean
                        vegetation (data.frame)
vegemat                 Spatial distribution of Mediterranean
                        vegetation (co-occurrence matrix)
vegesf                  Spatial distribution of Mediterranean
                        vegetation (sf data.frame)
