R: Mathematical Modelling of (Dynamic) Microbial Inactivation

# Mathematical Modelling of (Dynamic) Microbial Inactivation

## Documentation for package ‘bioinactivation’ version 1.3.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

Arrhenius_iso | Isothermal Arrhenius model
Bigelow_iso | Isothermal Bigelow's Model
build_temperature_interpolator | Continuum Interpolation of Discrete Temperatures Values
check_model_params | Correctness Check of Model Parameters
dArrhenius_model | First derivative of the Arrhenius model
dBigelow_model | First Derivate of the Linear Bigelow Model
dGeeraerd_model | First Derivate of Geeraerd's Model
dMafart_model | First Derivate of the Weibull-Mafart Model
dMetselaar_model | First Derivate of the Metselaar Model
dPeleg_model | First Derivate of the Weibull-Peleg Model
dynamic_inactivation | Example Dynamic Inactivation of a Microorganis
fit_dynamic_inactivation | Fitting of Dynamic Inactivation Models
fit_inactivation_MCMC | Fitting of dynamic inactivation with MCMC
fit_isothermal_inactivation | Fit of Isothermal Experiments
Geeraerd_iso | Isothermal Geeraerd Model
get_isothermal_model_data | Isothermal Model Data
get_model_data | Mapping of Simulation Model Functions
get_prediction_cost | Error of the Prediction of Microbial Inactivation
goodness_dyna | Goodness of fit for Dynamic fits
goodness_iso | Goodness of fit for Isothermal fits
goodness_MCMC | Goodness of fit for MCMC fits
goodness_of_fit | Goodness of fit for microbial inactivation models
is.FitInactivation | Test of FitInactivation object
is.FitInactivationMCMC | Test of FitInactivationMCMC object
is.IsoFitInactivation | Test of IsoFitInactivation object
is.PredInactivationMCMC | Test of PredInactivationMCMC object
is.SimulInactivation | Test of SimulInactivation object
isothermal_inactivation | Example Isothermal Inactivation of a Microorganis
laterosporus_dyna | Example Dynamic Inactivation of a Laterosporus
laterosporus_iso | Example Isothermal Inactivation of a Laterosporus
Metselaar_iso | Isothermal Metselaar model
plot.FitInactivation | Plot of FitInactivation Object
plot.FitInactivationMCMC | Plot of FitInactivationMCMC Object
plot.IsoFitInactivation | Plot of IsoFitInactivation Object
plot.PredInactivationMCMC | Plot of PredInactivationMCMC Object
plot.SimulInactivation | Plot of SimulInactivation Object
predict_inactivation | Prediction of Dynamic Inactivation
predict_inactivation_MCMC | Dynamic Prediction Intervals from a Monte Carlo Adjustment
sample_dynaFit | Random sample of the parameters of a FitInactivation object
sample_IsoFit | Random sample of the parameters of a IsoFitInactivation object
sample_MCMCfit | Random sample of the parameters of a FitInactivationMCMC object
summary.FitInactivation | Summary of a FitInactivation object
summary.FitInactivationMCMC | Summary of a FitInactivationMCMC object
summary.IsoFitInactivation | Summary of a IsoFitInactivation object
time_to_logreduction | Time to reach X log reductions
WeibullMafart_iso | Isothermal Weibull-Mafart Model
WeibullPeleg_iso | Isothermal Weibull-Peleg Model