Aryani_model            Secondary Aryani model
CPM_model               Secondary Cardinal Parameter (CPM) model
DynamicGrowth           DynamicGrowth class
FitCoupledGrowth        FitCoupledGrowth class
FitDynamicGrowth        FitDynamicGrowth class
FitDynamicGrowthMCMC    FitDynamicGrowthMCMC class
FitIsoGrowth            FitIsoGrowth class
FitMultipleDynamicGrowth
                        FitMultipleDynamicGrowth class
FitMultipleGrowthMCMC   FitMultipleGrowthMCMC class
FitSecondaryGrowth      FitSecondaryGrowth class
FitSerial               FitSerial class
GlobalGrowthComparison
                        GlobalGrowthComparison class
GlobalGrowthFit         GlobalGrowthFit class
GrowthComparison        GrowthComparison class
GrowthFit               GrowthFit class
GrowthPrediction        GrowthPrediction class
GrowthUncertainty       GrowthUncertainty class
IsothermalGrowth        IsothermalGrowth class
MCMCcoupled             MCMCcoupled class
MCMCgrowth              MCMCgrowth class
Q0_to_lambda            Lag phase duration from Q0
Rossoaw_model           Secondary Rosso model for water activity
SecondaryComparison     SecondaryComparison class
StochasticGrowth        StochasticGrowth class
TimeDistribution        TimeDistribution class
approx_env              Generates functions for linear interpolation of
                        environmental conditions
arabian_tractors        Number of tractors in the Arab World according
                        to the World Bank
bilinear_lag            Bilinear model with lag phase
bilinear_stationary     Bilinear model with stationary phase
calculate_gammas        Calculates every gamma factor
calculate_gammas_secondary
                        Gamma factors for fitting secondary models
check_growth_guess      Visual check of an initial guess of the model
                        parameters
check_primary_pars      Basic check of parameters for primary models
check_secondary_pars    Basic checks of secondary parameters
check_stochastic_pars   Model definition checks for
                        predict_stochastic_growth
compare_growth_fits     Model comparison and selection for growth
                        models
compare_secondary_fits
                        Model comparison and selection for secondary
                        growth models
conditions_pH_temperature
                        Conditions during a dynamic growth experiment
cost_coupled_onestep    Residuals of the coupled Baranyi model
cost_coupled_twosteps   Cost for the coupled model fitted in two-steps
dBaranyi                Baranyi growth model
distribution_to_logcount
                        Distribution of times to reach a certain
                        microbial count
example_cardinal        Growth rates obtained for several growth
                        experiments
example_coupled_onestep
                        Example data for two-steps fitting of the
                        Baranyi-Ratkowsky model
example_coupled_twosteps
                        Example data for two-steps fitting of the
                        Baranyi-Ratkowsky model
example_dynamic_growth
                        Microbial growth under dynamic conditions
example_env_conditions
                        Environmental conditions during a dynamic
                        experiment
example_od              Example data for TTD calculation and the
                        serial-dilution method
extract_primary_pars    A helper to build the primary models
extract_secondary_pars
                        A helper to build the secondary models
fit_MCMC_growth         Fit growth models using MCMC
fit_coupled_growth      Growth fitting considering link between mu and
                        lambda for the Baranyi-Ratkowsky model
fit_dynamic_growth      Fit dynamic growth models
fit_growth              Fitting microbial growth
fit_isothermal_growth   Fit primary growth models
fit_multiple_growth     Fitting growth models to multiple dynamic
                        experiments
fit_multiple_growth_MCMC
                        Fitting growth models to multiple dynamic
                        experiments using MCMC
fit_secondary_growth    Fit secondary growth models
fit_serial_dilution     Serial-fold dilution method
full_Ratkowski          Full Ratkowsky model
get_TTDs                Estimation of the Time to Detection of OD
                        measurements
get_all_predictions     A helper for making the plots
get_dyna_residuals      Residuals of dynamic prediction
get_iso_residuals       Residuals of isothermal prediction
get_multi_dyna_residuals
                        Residuals of multiple dynamic predictions
get_secondary_residuals
                        Residuals of secondary models
greek_tractors          Number of tractors in Greece according to the
                        World Bank
growth_pH_temperature   Example of dynamic growth
growth_salmonella       Growth of Salmonella spp in broth
inhibitory_model        Secondary model for inhibitory compounds
is.DynamicGrowth        Test of DynamicGrowth object
is.FitDynamicGrowth     Test of FitDynamicGrowth object
is.FitDynamicGrowthMCMC
                        Test of FitDynamicGrowthMCMC object
is.FitIsoGrowth         Test of FitIsoGrowth object
is.FitMultipleDynamicGrowth
                        Test of FitMultipleDynamicGrowth object
is.FitMultipleDynamicGrowthMCMC
                        Test of FitMultipleDynamicGrowthMCMC object
is.FitSecondaryGrowth   Test of FitSecondaryGrowth object
is.GlobalGrowthFit      Test of GlobalGrowthFit object
is.GrowthFit            Test of GrowthFit object
is.GrowthPrediction     Test of GrowthPrediction object
is.GrowthUncertainty    Test of GrowthUncertainty object
is.IsothermalGrowth     Test of IsothermalGrowth object
is.MCMCgrowth           Test of MCMCgrowth object
is.StochasticGrowth     Test of StochasticGrowth object
iso_Baranyi             Isothermal Baranyi model
iso_Baranyi_noLag       Isothermal Baranyi model without lag phase
iso_Baranyi_noStat      Isothermal Baranyi model without stationary
                        phase
iso_repGompertz         Reparameterized Gompertz model
lambda_to_Q0            Q0 from lag phase duration
logistic_model          Logistic growth model
loglinear_model         Loglinear model
make_guess_coupled      Initial guesses for fitting the
                        Baranyi-Ratkowsky model
make_guess_factor       Initial guesses for the secondary model of one
                        factor
make_guess_primary      Initial guesses for fitting primary growth
                        models
make_guess_secondary    Initial guesses for the parameters of a
                        secondary model
multiple_conditions     Environmental conditions during several dynamic
                        experiments
multiple_counts         Population growth observed in several dynamic
                        experiments
multiple_experiments    A set of growth experiments under dynamic
                        conditions
pred_coupled_baranyi    Predictions of the coupled Baranyi model
pred_lambda             Prediction of lambda for the coupled model
pred_sqmu               Prediction of the square root of mu for the
                        coupled model
predictMCMC             Generic for calculating predictions with
                        uncertainty from fits
predictMCMC_coupled     Generic for calculating predictions with
                        uncertainty from fits
predict_MCMC_growth     Stochastic growth of MCMC fit
predict_dynamic_growth
                        Growth under dynamic conditions
predict_growth          Prediction of microbial growth
predict_growth_uncertainty
                        Isothermal growth with parameter uncertainty
predict_isothermal_growth
                        Isothermal microbial growth
predict_stochastic_growth
                        Deprecated isothermal growth with parameter
                        uncertainty
primary_model_data      Metainformation of primary growth models
refrigeratorSpain       Temperature recorded in refrigerators
residuals_lambda        Residuals for lambda for the coupled model
residuals_sqmu          Residuals for the square root of mu for the
                        coupled model
richards_model          Richards growth model
secondary_model_data    Metainformation of secondary growth models
show_guess_coupled      Plot of the initial guess for the
                        Baranyi-Ratkowsky model
show_guess_dynamic      Plot of the initial guess for growth under
                        dynamic environmental conditions
show_guess_primary      Plot of the initial guess for growth under
                        constant environmental conditions
time_to_logcount        Time to reach a given microbial count
time_to_size            Time for the population to reach a given size
trilinear_model         Trilinear growth model
zwietering_gamma        Zwietering gamma model
