R: Biomarker Threshold Models

# Biomarker Threshold Models

## Documentation for package ‘bhm’ version 1.19

- DESCRIPTION file

## Help Pages

bhm-package | An R package for the biomarker threshold models
arns | Function to perform Adaptive Rejection Sampling
ars | Function to perform Adaptive Rejection Sampling
bhm | Fitting Biomarker Threshold Models
bhm-doc | An R package for the biomarker threshold models
bhm.default | Fitting Biomarker Threshold Models
bhm.formula | Fitting Biomarker Threshold Models
bhmControl | Auxiliary function for bhm fitting
bhmFit | Fitting Biomarker Threshold Models
bhmGibbs | Fitting Biomarker Threshold Models
brm | Fitting Biomarker Continuous Threshold Models
brm.default | Fitting Biomarker Continuous Threshold Models
brm.formula | Fitting Biomarker Continuous Threshold Models
coxScoreHess | Calculate the Score / Jacobian Function
data | dataset
dpicexp | The Piecewise Exponential Distribution
gendat.glm | dataset
gendat.surv | dataset
ggkm | Creates a Kaplan-Meier plot with at risk tables below
glmpLRT | Penalized likelihood ratio test for the generalized linear models.
glmpLRT.default | Penalized likelihood ratio test for the generalized linear models.
glmpLRT.formula | Penalized likelihood ratio test for the generalized linear models.
Hpicexp | The Piecewise Exponential Distribution
hpicexp | The Piecewise Exponential Distribution
llm | Fit an L-shape linear model
llm.default | Fit an L-shape linear model
llm.formula | Fit an L-shape linear model
mpl | Joint models for clustered data with binary and survival outcomes.
mpl.formula | Joint models for clustered data with binary and survival outcomes.
mplFit | Joint models for clustered data with binary and survival outcomes.
multiRoot | m-Dimensional Root (Zero) Finding
numHessian | Calculate Hessian or Information Matrix
numJacobian | Calculate the Score / Jacobian Function
numScore | Calculate the Score / Jacobian Function
picfit | The Piecewise Exponential Distribution
picreg | The Piecewise Exponential Distribution
pIndex | Probability Index for Survival Time Difference
pIndex.default | Probability Index for Survival Time Difference
pIndex.formula | Probability Index for Survival Time Difference
pIndexControl | Auxiliary function for pIndex fitting
pIndexFit | Probability Index for Survival Time Difference
pIndexLocal | Probability Index for Survival Time Difference
pIndexThreshold | Probability Index for Survival Time Difference
plot.bhm | Plot a fitted biomarker threhold model
plot.brm | Plot a fitted biomarker threhold model
plot.glmpLRT | Penalized likelihood ratio test for the generalized linear models.
plot.llm | Fit an L-shape linear model
plot.pIndex | Plot a fitted biomarker threhold model
plot.resboot | Plot a fitted biomarker threhold model
plot.residuals.brm | Plot a fitted biomarker threhold model
plot.rmscb | Fitting Restricted Mean Survival Time Models with a Continuous Biomarker
ppicexp | The Piecewise Exponential Distribution
print.bhm | print a fitted object or a summary of fitted object
print.brm | print a fitted object or a summary of fitted object
print.glmpLRT | Penalized likelihood ratio test for the generalized linear models.
print.llm | Fit an L-shape linear model
print.mpl | print a fitted object or a summary of fitted object
print.picreg | print a fitted object or a summary of fitted object
print.pIndex | print a fitted object or a summary of fitted object
print.resboot | print a fitted object or a summary of fitted object
print.rmscb | Fitting Restricted Mean Survival Time Models with a Continuous Biomarker
print.summary.bhm | print a fitted object or a summary of fitted object
print.summary.brm | print a fitted object or a summary of fitted object
prolikControl | Auxiliary function for bhm fitting
prolikFit | Fitting Biomarker Threshold Models
qpicexp | The Piecewise Exponential Distribution
resboot | Rresidual Bootstrap Test (RBT) for treatment-biomarker interaction
resboot.default | Rresidual Bootstrap Test (RBT) for treatment-biomarker interaction
resboot.formula | Rresidual Bootstrap Test (RBT) for treatment-biomarker interaction
residuals.brm | Fitting Biomarker Continuous Threshold Models
rmscb | Fitting Restricted Mean Survival Time Models with a Continuous Biomarker
rmscb.default | Fitting Restricted Mean Survival Time Models with a Continuous Biomarker
rmscb.formula | Fitting Restricted Mean Survival Time Models with a Continuous Biomarker
rmsControl | Fitting Restricted Mean Survival Time Models with a Continuous Biomarker
rpicexp | The Piecewise Exponential Distribution
rpwexp | Function to perform Adaptive Rejection Sampling
summary.bhm | Fitting Biomarker Threshold Models
summary.brm | Fitting Biomarker Continuous Threshold Models
summary.glmpLRT | Penalized likelihood ratio test for the generalized linear models.
summary.picreg | The Piecewise Exponential Distribution
summary.rmscb | Fitting Restricted Mean Survival Time Models with a Continuous Biomarker
thm.fit | Fitting Biomarker Threshold Models
thm.lik | Fitting Biomarker Threshold Models
x.cdf | Fitting Biomarker Threshold Models