<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.evolution.likelihood" required="" version="2.4">


    <data
id="Felinecoronavirus_Envelope_1"
name="alignment">
                    <sequence id="seq_FJ938051.1|Felinecoronavirus|cat|USACalifornia|2002|Envelope" taxon="FJ938051.1|Felinecoronavirus|cat|USACalifornia|2002|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgcaatttaggtaagactattatagtactacctgcacgccatgcatatgatgcctataagaactttatgcagatyaaggcatataatcccgacgaagcacttttggtttga"/>
                    <sequence id="seq_FJ938053.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" taxon="FJ938053.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgtcagcgtcttcttttggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtatgttgcaatttgggtaagactattatagtattacctgcacgccatgcatatgatgcctacaagacctttatgcaaattaaggcatataatcccgacgaagcattcttggtttga"/>
                    <sequence id="seq_FJ938054.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" taxon="FJ938054.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgtcagcgtcttctttttgctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtatgttgcaatttgggtaagactattatagtattacctgcacgccatgcatatgatgcctacaagacctttatgcaaattaaggcatataaccccgacgaagcattcttggtttga"/>
                    <sequence id="seq_FJ938055.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" taxon="FJ938055.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggtcgttagcgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtatgttgcaatctgggtaagactattatagtactacctgctcgccatgcgtatgatgcctataagacttttatgcagattaaggcatacaatcccgacgaagcatttttggtttga"/>
                    <sequence id="seq_FJ938057.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" taxon="FJ938057.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttyctagggcatttactatcatagatgaccacggcatggtcgttagtgtcttcttttggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgcaatttaggtaagactattatagtactaccggcgcgccatgcatatgatgcctacaasaattttatgcaaataaaggcatataatcccgacgaagcattcttagtttga"/>
                    <sequence id="seq_FJ938058.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" taxon="FJ938058.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagcgtcttcttttggctcctgttgataattgtattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtgtgttgcaatttgggtaagactattatagtactacctgcacgccatgcatatgatgcctacaagacctttatgcaaattaaggcatataatcccgacgaagcatttctggtttga"/>
                    <sequence id="seq_FJ938060.1|Felinecoronavirus|cat|USACalifornia|1993|Envelope" taxon="FJ938060.1|Felinecoronavirus|cat|USACalifornia|1993|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttatcaaattgtgcatggtgtgttgcaatttaggtaagactattatagtactacctgcacgccatgcgtatgatgcctataagaactttatgcatattaaggcatatgatcccgatgaagcattcttggtttga"/>
                    <sequence id="seq_FJ938061.1|Felinecoronavirus|cat|USACalifornia|1998|Envelope" taxon="FJ938061.1|Felinecoronavirus|cat|USACalifornia|1998|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttatcaaattgtgcatggtgtgttgcaatttaggtaagactattatagtactacctgcacgccatgcgtatgatgcctataagaactttatgcatattaaggcatatgatcccgatgaagcattcttggtttga"/>
                    <sequence id="seq_FJ938062.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" taxon="FJ938062.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgtcagcgtcttcttctggctcctgttgataattatattgatattgttctcaatagcattgctaaatgttattaaattgtgcatggtatgttgcaatttgggtaagactattatagtactaccagcacgccatgtctatgatgcctataagacttttatgcagatcaaggcatataatcccgacgaagcattcttggtttga"/>
                    <sequence id="seq_GU553362.1|Felinecoronavirus|feline|Netherlands|2007|Envelope" taxon="GU553362.1|Felinecoronavirus|feline|Netherlands|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttaccatcatagatgaccatggcatggttgtcagtgtcttcttttggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtttgttgcaatttgggtaagactattatagtactacctgcacgccatgcatatgatgcctataagacttttatgcagattaaggcatataaccccgatgaagcatttttggtttga"/>
                    <sequence id="seq_HQ012367.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope" taxon="HQ012367.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttccttgggcatttactatcatagatgaccatggtatggtagttagtgtcttcttttggctcctgttgataatcatattgatattgttttcaatagcattgctaaatgttattaaagtgtgcatggtgtgctgcaatttgggtaagactatcatagtactacccgcacgccatgcatatgatgcctataagacctttatgcagattaaggcatataatcccgacgaagcatttttggtttga"/>
                    <sequence id="seq_HQ012368.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope" taxon="HQ012368.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggcatggtcgttagtgtcttcttttggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgctgcaatttaggtaagactattatagtactaccggcacgccatgcatatgatgcctacaagaattttatgcaaataaaggcatataatcccgacgaagcatttttagtttga"/>
                    <sequence id="seq_HQ012370.1|Felinecoronavirus|feline|Netherlands|2008|Envelope" taxon="HQ012370.1|Felinecoronavirus|feline|Netherlands|2008|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagcgtcttcttctggctcctgttgataattgtattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtatgttgcaatttgggtaagactattatagtactacctgtacgccatgcatatgatgcctataagacctttatgcagattaaggcatataattctgacgaagcactcttggtttga"/>
                    <sequence id="seq_HQ392469.1|Felinecoronavirus|Feliscatus|Netherlands|2008|Envelope" taxon="HQ392469.1|Felinecoronavirus|Feliscatus|Netherlands|2008|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgtaagcgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattatgtatggtttgttgcgatttaggtaaaactattatagtactacctgcacgccatgcgtatgatgcctataagacctttatgcagattaaggcatataatcccgatgaagcattcttggtttga"/>
                    <sequence id="seq_HQ392470.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope" taxon="HQ392470.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttttggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtgtgctgcaatttgggtaagactatcatagtactacccgcacgccatgcatatgatgcctataagacctttatgcagattaaggcatataatcccgacgaagcatttttggtttga"/>
                    <sequence id="seq_KC461236.1|Felinecoronavirus|Feliscatus|USA|2011|Envelope" taxon="KC461236.1|Felinecoronavirus|Feliscatus|USA|2011|Envelope" totalcount="4" value="atgacgttccctagggcatttactatcatagatgaccatggcatggttgttagcgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgcaatttgggtaagactattatagtactacctgcacgccatgcatatgatgcctataagacctttatgcaaaccaaggcatataatcccgacgaagcatttttggtttga"/>
                    <sequence id="seq_KC461237.1|Felinecoronavirus|Feliscatus|USA|2011|Envelope" taxon="KC461237.1|Felinecoronavirus|Feliscatus|USA|2011|Envelope" totalcount="4" value="atgacgttccctagggcatttactatcatagatgaccatggcatggttgttagcgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgcaatttgggtaagactattatagtactacctgcacgccatgcatatgatgcctataagacctttatgcaaaccaaggcatataatcccgacgaagcatttttggtttga"/>
                    <sequence id="seq_KP143507.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" taxon="KP143507.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgttagtgtcttcttctggctcctgttgataattgtattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgtaatttgggtaagactattatagtattacccgctcgccatgcatatgatgcctataagacctttatgcaaattaaggcatataatcccgacgaagcattcttagtttga"/>
                    <sequence id="seq_KP143509.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" taxon="KP143509.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgttagtgtcttcttctggctcctgttgataattgtattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgtaatttgggtaagactattatagtattacccgctcgccatgcatatgatgcctataagacctttatgcaaattaaggcatataatcccgacgaagcattcttagtttga"/>
                    <sequence id="seq_KP143510.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" taxon="KP143510.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgttagtgtcttcttctggctcctgttgataattgtattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgtaatttgggtaagactattatagtattacccgctcgccatgcatatgatgcctataagacctttatgcaaattaaggcatataatcccgacgaagcattcttagtttga"/>
                    <sequence id="seq_KP143511.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" taxon="KP143511.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgttagtgtcttcttctggctcctgttgataattgtattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgtaatttgggtaagactattatagtattacccgctcgccatgcatatgatgcctataagacctttatgcaaattaaggcatataatcccgacgaagcattcttagtttga"/>
                    <sequence id="seq_KP143512.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" taxon="KP143512.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgttagtgtcttcttctggctcctgttgataattgtattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtatgttgtaatttgggtaagactattatagtattacccgctcgccatgcatatgatgcctataagacctttatgcaaattaaggcatataatcccgacgaagcattcttagtttga"/>
                    <sequence id="seq_KU215420.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" taxon="KU215420.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttatcaaattgtgcatggtgtgttgcaatttaggtaagactattatagtactacctgcacgccatgcgtatgatgcctataagaactttatgcatattaaggcatatgatcccgatgaagcattcttggtttga"/>
                    <sequence id="seq_KU215423.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" taxon="KU215423.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttatcaaattgtgcatggtgtgttgcaatttaggtaagactattatagtactacctgcacgccatgcgtatgatgcctataagaactttatgcatattaaggcatatgatcccgatgaagcattcttggtttga"/>
                    <sequence id="seq_KU215424.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" taxon="KU215424.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttatcaaattgtgcatggtgtgttgcaatttaggtaagactattatagtactacctgcacgccatgcgtatgatgcctataagaactttatgcatattaaggcatatgatcccgatgaagcattcttggtttga"/>
                    <sequence id="seq_KU215427.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" taxon="KU215427.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgttagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttatcaaattgtgcatggtgtgttgcaatttaggtaagactattatagtactacctgcacgccatgcgtatgatgcctataagaactttatgcatattaaggcatatgatcccgatgaagcattcttggtttga"/>
                    <sequence id="seq_KX722530.1|Felinecoronavirus|Feliscatus|Denmark|2015|Envelope" taxon="KX722530.1|Felinecoronavirus|Feliscatus|Denmark|2015|Envelope" totalcount="4" value="atgatgtttcctagggcttttactatcatagatgaccatggtatggttgtaagcgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtttgttgcaatctgggtaagactattatagtactacctgcacgccatgcatatgatgcctacaagacttttatgcaaattaaggcatataatcccgacgaagcacttttggtttga"/>
                    <sequence id="seq_KY292377.1|Felinecoronavirus|cat|China|2016|Envelope" taxon="KY292377.1|Felinecoronavirus|cat|China|2016|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagacgaccatggtatggttgtcagcgtattcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtatgttgcaatttgggtaagactatcatagtactacctgctcgccatgcatatgatgcctataagacatttatgcaaattaaggcatataatcctgatgaagcattcttggtttga"/>
                    <sequence id="seq_KY566211.1|Felinecoronavirus|cat|China|2016|Envelope" taxon="KY566211.1|Felinecoronavirus|cat|China|2016|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggcatggttattagtgtcttcttctggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaaattgtgcatggtgtgttgcaatttgggtaagactatcatagtactacctgcacgccatgcatatgatgcctataagacatttatgcgaattaaggcatataatcctgacgaagcattcttggtttga"/>
                    <sequence id="seq_MG893511.1|Felinecoronavirus|Feliscatus|Germany|2012|Envelope" taxon="MG893511.1|Felinecoronavirus|Feliscatus|Germany|2012|Envelope" totalcount="4" value="atgatgtttcctagggcatttactatcatagatgaccatggtatggttgtgagcgtcttcttttggctcctgttgataattatattgatattgttttcaatagcattgctaaatgttattaagttatgcatggtatgttgcaatttgggtaatactattatagtgttacctgcacgccacgcatatgatgcctataagacttttatgcagattaaggcatataatcccgatgaagcattctcggtttga"/>
                </data>


    


    


    
<map name="Uniform" >beast.math.distributions.Uniform</map>
<map name="Exponential" >beast.math.distributions.Exponential</map>
<map name="LogNormal" >beast.math.distributions.LogNormalDistributionModel</map>
<map name="Normal" >beast.math.distributions.Normal</map>
<map name="Beta" >beast.math.distributions.Beta</map>
<map name="Gamma" >beast.math.distributions.Gamma</map>
<map name="LaplaceDistribution" >beast.math.distributions.LaplaceDistribution</map>
<map name="prior" >beast.math.distributions.Prior</map>
<map name="InverseGamma" >beast.math.distributions.InverseGamma</map>
<map name="OneOnX" >beast.math.distributions.OneOnX</map>


<run id="mcmc" spec="MCMC" chainLength="10000">
    <state id="state" storeEvery="5000">
        <tree id="Tree.t:Felinecoronavirus_Envelope_1" name="stateNode">
            <trait id="dateTrait.t:Felinecoronavirus_Envelope_1" spec="beast.evolution.tree.TraitSet" traitname="date-forward" value="KX722530.1|Felinecoronavirus|Feliscatus|Denmark|2015|Envelope=2015,FJ938053.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope=2007,GU553362.1|Felinecoronavirus|feline|Netherlands|2007|Envelope=2007,KP143512.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope=2013,KU215424.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope=2013,HQ392470.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope=2007,KY566211.1|Felinecoronavirus|cat|China|2016|Envelope=2016,KP143510.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope=2013,FJ938057.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope=2007,MG893511.1|Felinecoronavirus|Feliscatus|Germany|2012|Envelope=2012,FJ938055.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope=2007,FJ938054.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope=2007,HQ012368.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope=2007,FJ938058.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope=2007,KY292377.1|Felinecoronavirus|cat|China|2016|Envelope=2016,FJ938060.1|Felinecoronavirus|cat|USACalifornia|1993|Envelope=1993,KU215427.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope=2013,KC461236.1|Felinecoronavirus|Feliscatus|USA|2011|Envelope=2011,KP143509.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope=2013,KC461237.1|Felinecoronavirus|Feliscatus|USA|2011|Envelope=2011,HQ392469.1|Felinecoronavirus|Feliscatus|Netherlands|2008|Envelope=2008,KU215423.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope=2013,FJ938062.1|Felinecoronavirus|cat|NetherlandsUtrecht|2007|Envelope=2007,KP143507.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope=2013,FJ938051.1|Felinecoronavirus|cat|USACalifornia|2002|Envelope=2002,HQ012370.1|Felinecoronavirus|feline|Netherlands|2008|Envelope=2008,HQ012367.1|Felinecoronavirus|feline|NetherlandsUtrecht|2007|Envelope=2007,FJ938061.1|Felinecoronavirus|cat|USACalifornia|1998|Envelope=1998,KU215420.1|Felinecoronavirus|Feliscatus|Belgium|2013|Envelope=2013,KP143511.1|Felinecoronavirus|Feliscatus|UnitedKingdom|2013|Envelope=2013">
                <taxa id="TaxonSet.Felinecoronavirus_Envelope_1" spec="TaxonSet">
                    <alignment idref="Felinecoronavirus_Envelope_1"/>
                </taxa>
            </trait>
            <taxonset idref="TaxonSet.Felinecoronavirus_Envelope_1"/>
        </tree>
        <parameter id="ucldStdev.c:Felinecoronavirus_Envelope_1" lower="0.0" name="stateNode">0.1</parameter>
        <stateNode id="rateCategories.c:Felinecoronavirus_Envelope_1" spec="parameter.IntegerParameter" dimension="58">1</stateNode>
        <parameter id="bPopSizes.t:Felinecoronavirus_Envelope_1" dimension="5" lower="0.0" name="stateNode" upper="380000.0">380.0</parameter>
        <stateNode id="bGroupSizes.t:Felinecoronavirus_Envelope_1" spec="parameter.IntegerParameter" dimension="5">1</stateNode>
    </state>

    <init id="RandomTree.t:Felinecoronavirus_Envelope_1" spec="beast.evolution.tree.RandomTree" estimate="false" initial="@Tree.t:Felinecoronavirus_Envelope_1" taxa="@Felinecoronavirus_Envelope_1">
        <populationModel id="ConstantPopulation0.t:Felinecoronavirus_Envelope_1" spec="ConstantPopulation">
            <parameter id="randomPopSize.t:Felinecoronavirus_Envelope_1" name="popSize">1.0</parameter>
        </populationModel>
    </init>

    <distribution id="posterior" spec="util.CompoundDistribution">
        <distribution id="prior" spec="util.CompoundDistribution">
            <distribution id="BayesianSkyline.t:Felinecoronavirus_Envelope_1" spec="BayesianSkyline" groupSizes="@bGroupSizes.t:Felinecoronavirus_Envelope_1" popSizes="@bPopSizes.t:Felinecoronavirus_Envelope_1">
                <treeIntervals id="BSPTreeIntervals.t:Felinecoronavirus_Envelope_1" spec="TreeIntervals" tree="@Tree.t:Felinecoronavirus_Envelope_1"/>
            </distribution>
            <distribution id="MarkovChainedPopSizes.t:Felinecoronavirus_Envelope_1" spec="beast.math.distributions.MarkovChainDistribution" jeffreys="true" parameter="@bPopSizes.t:Felinecoronavirus_Envelope_1"/>
            <prior id="ucldStdevPrior.c:Felinecoronavirus_Envelope_1" name="distribution" x="@ucldStdev.c:Felinecoronavirus_Envelope_1">
                <Gamma id="Gamma.0" name="distr">
                    <parameter id="RealParameter.0" estimate="false" name="alpha">0.5396</parameter>
                    <parameter id="RealParameter.1" estimate="false" name="beta">0.3819</parameter>
                </Gamma>
            </prior>
        </distribution>
        <distribution id="likelihood" spec="util.CompoundDistribution" useThreads="true">
            <distribution id="treeLikelihood.Felinecoronavirus_Envelope_1" spec="ThreadedTreeLikelihood" data="@Felinecoronavirus_Envelope_1" tree="@Tree.t:Felinecoronavirus_Envelope_1">
                <siteModel id="SiteModel.s:Felinecoronavirus_Envelope_1" spec="SiteModel">
                    <parameter id="mutationRate.s:Felinecoronavirus_Envelope_1" estimate="false" name="mutationRate">1.0</parameter>
                    <parameter id="gammaShape.s:Felinecoronavirus_Envelope_1" estimate="false" name="shape">1.0</parameter>
                    <parameter id="proportionInvariant.s:Felinecoronavirus_Envelope_1" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter>
                    <substModel id="JC69.s:Felinecoronavirus_Envelope_1" spec="JukesCantor"/>
                </siteModel>
                <branchRateModel id="RelaxedClock.c:Felinecoronavirus_Envelope_1" spec="beast.evolution.branchratemodel.UCRelaxedClockModel" rateCategories="@rateCategories.c:Felinecoronavirus_Envelope_1" tree="@Tree.t:Felinecoronavirus_Envelope_1">
                    <LogNormal id="LogNormalDistributionModel.c:Felinecoronavirus_Envelope_1" S="@ucldStdev.c:Felinecoronavirus_Envelope_1" meanInRealSpace="true" name="distr">
                        <parameter id="RealParameter.4" estimate="false" lower="0.0" name="M" upper="1.0">1.0</parameter>
                    </LogNormal>
                    <parameter id="ucldMean.c:Felinecoronavirus_Envelope_1" estimate="false" name="clock.rate">0.001</parameter>
                </branchRateModel>
            </distribution>
        </distribution>
    </distribution>

    <operator id="popSizesScaler.t:Felinecoronavirus_Envelope_1" spec="ScaleOperator" parameter="@bPopSizes.t:Felinecoronavirus_Envelope_1" scaleFactor="0.75" weight="15.0"/>

    <operator id="groupSizesDelta.t:Felinecoronavirus_Envelope_1" spec="DeltaExchangeOperator" integer="true" weight="6.0">
        <intparameter idref="bGroupSizes.t:Felinecoronavirus_Envelope_1"/>
    </operator>

    <operator id="BayesianSkylineTreeScaler.t:Felinecoronavirus_Envelope_1" spec="ScaleOperator" scaleFactor="0.5" tree="@Tree.t:Felinecoronavirus_Envelope_1" weight="3.0"/>

    <operator id="BayesianSkylineTreeRootScaler.t:Felinecoronavirus_Envelope_1" spec="ScaleOperator" rootOnly="true" scaleFactor="0.5" tree="@Tree.t:Felinecoronavirus_Envelope_1" weight="3.0"/>

    <operator id="BayesianSkylineUniformOperator.t:Felinecoronavirus_Envelope_1" spec="Uniform" tree="@Tree.t:Felinecoronavirus_Envelope_1" weight="30.0"/>

    <operator id="BayesianSkylineSubtreeSlide.t:Felinecoronavirus_Envelope_1" spec="SubtreeSlide" tree="@Tree.t:Felinecoronavirus_Envelope_1" weight="15.0"/>

    <operator id="BayesianSkylineNarrow.t:Felinecoronavirus_Envelope_1" spec="Exchange" tree="@Tree.t:Felinecoronavirus_Envelope_1" weight="15.0"/>

    <operator id="BayesianSkylineWide.t:Felinecoronavirus_Envelope_1" spec="Exchange" isNarrow="false" tree="@Tree.t:Felinecoronavirus_Envelope_1" weight="3.0"/>

    <operator id="BayesianSkylineWilsonBalding.t:Felinecoronavirus_Envelope_1" spec="WilsonBalding" tree="@Tree.t:Felinecoronavirus_Envelope_1" weight="3.0"/>

    <operator id="ucldStdevScaler.c:Felinecoronavirus_Envelope_1" spec="ScaleOperator" parameter="@ucldStdev.c:Felinecoronavirus_Envelope_1" scaleFactor="0.5" weight="3.0"/>

    <operator id="CategoriesRandomWalk.c:Felinecoronavirus_Envelope_1" spec="IntRandomWalkOperator" parameter="@rateCategories.c:Felinecoronavirus_Envelope_1" weight="10.0" windowSize="1"/>

    <operator id="CategoriesSwapOperator.c:Felinecoronavirus_Envelope_1" spec="SwapOperator" intparameter="@rateCategories.c:Felinecoronavirus_Envelope_1" weight="10.0"/>

    <operator id="CategoriesUniform.c:Felinecoronavirus_Envelope_1" spec="UniformOperator" parameter="@rateCategories.c:Felinecoronavirus_Envelope_1" weight="10.0"/>

    <operator id="StrictClockRateScaler.c:Felinecoronavirus_Envelope_1" spec="ScaleOperator" parameter="@clockRate.c:Felinecoronavirus_Envelope_1" scaleFactor="0.75" weight="3.0"/>

    <operator id="strictClockUpDownOperator.c:Felinecoronavirus_Envelope_1" spec="UpDownOperator" scaleFactor="0.75" weight="3.0">
        <up idref="clockRate.c:Felinecoronavirus_Envelope_1"/>
        <down idref="Tree.t:Felinecoronavirus_Envelope_1"/>
    </operator>

    <logger id="tracelog" fileName="Felinecoronavirus_Envelope_1.log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart">
        <log idref="posterior"/>
        <log idref="likelihood"/>
        <log idref="prior"/>
        <log idref="treeLikelihood.Felinecoronavirus_Envelope_1"/>
        <log id="TreeHeight.t:Felinecoronavirus_Envelope_1" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:Felinecoronavirus_Envelope_1"/>
        <log idref="ucldStdev.c:Felinecoronavirus_Envelope_1"/>
        <log id="rate.c:Felinecoronavirus_Envelope_1" spec="beast.evolution.branchratemodel.RateStatistic" branchratemodel="@RelaxedClock.c:Felinecoronavirus_Envelope_1" tree="@Tree.t:Felinecoronavirus_Envelope_1"/>
        <log idref="BayesianSkyline.t:Felinecoronavirus_Envelope_1"/>
        <log idref="bPopSizes.t:Felinecoronavirus_Envelope_1"/>
        <log idref="bGroupSizes.t:Felinecoronavirus_Envelope_1"/>
        <log idref="clockRate.c:Felinecoronavirus_Envelope_1"/>
    </logger>

    <logger id="screenlog" logEvery="1000">
        <log idref="posterior"/>
        <log id="ESS.0" spec="util.ESS" arg="@posterior"/>
        <log idref="likelihood"/>
        <log idref="prior"/>
    </logger>

    <logger id="treelog.t:Felinecoronavirus_Envelope_1" fileName="$(tree).trees" logEvery="1000" mode="tree">
        <log id="TreeWithMetaDataLogger.t:Felinecoronavirus_Envelope_1" spec="beast.evolution.tree.TreeWithMetaDataLogger" branchratemodel="@RelaxedClock.c:Felinecoronavirus_Envelope_1" tree="@Tree.t:Felinecoronavirus_Envelope_1"/>
    </logger>

</run>

</beast>
