R: Plotting for Bayesian Models

# Plotting for Bayesian Models

## Documentation for package ‘bayesplot’ version 1.15.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

A B C F G H L M N O P R S T V X Y

bayesplot-package | *bayesplot*: Plotting for Bayesian Models

## -- A --

abline_01 | Convenience functions for adding or changing plot details
available_mcmc | Get or view the names of available plotting or data functions
available_ppc | Get or view the names of available plotting or data functions
available_ppd | Get or view the names of available plotting or data functions

## -- B --

bayesplot | *bayesplot*: Plotting for Bayesian Models
bayesplot-colors | Set, get, or view *bayesplot* color schemes
bayesplot-extractors | Extract quantities needed for plotting from model objects
bayesplot-helpers | Convenience functions for adding or changing plot details
bayesplot_grid | Arrange plots in a grid
bayesplot_theme_get | Get, set, and modify the active *bayesplot* theme
bayesplot_theme_replace | Get, set, and modify the active *bayesplot* theme
bayesplot_theme_set | Get, set, and modify the active *bayesplot* theme
bayesplot_theme_update | Get, set, and modify the active *bayesplot* theme

## -- C --

color_scheme_get | Set, get, or view *bayesplot* color schemes
color_scheme_set | Set, get, or view *bayesplot* color schemes
color_scheme_view | Set, get, or view *bayesplot* color schemes

## -- F --

facet_bg | Convenience functions for adding or changing plot details
facet_text | Convenience functions for adding or changing plot details

## -- G --

grid_lines | Convenience functions for adding or changing plot details

## -- H --

hline_0 | Convenience functions for adding or changing plot details
hline_at | Convenience functions for adding or changing plot details

## -- L --

lbub | Convenience functions for adding or changing plot details
legend_move | Convenience functions for adding or changing plot details
legend_none | Convenience functions for adding or changing plot details
legend_text | Convenience functions for adding or changing plot details
log_posterior | Extract quantities needed for plotting from model objects
log_posterior.CmdStanMCMC | Extract quantities needed for plotting from model objects
log_posterior.stanfit | Extract quantities needed for plotting from model objects
log_posterior.stanreg | Extract quantities needed for plotting from model objects

## -- M --

MCMC | Plots for Markov chain Monte Carlo simulations
MCMC-combos | Combination plots
MCMC-diagnostics | General MCMC diagnostics
MCMC-distributions | Histograms and kernel density plots of MCMC draws
MCMC-intervals | Plot interval estimates from MCMC draws
MCMC-nuts | Diagnostic plots for the No-U-Turn-Sampler (NUTS)
MCMC-overview | Plots for Markov chain Monte Carlo simulations
MCMC-parcoord | Parallel coordinates plot of MCMC draws
MCMC-recover | Compare MCMC estimates to "true" parameter values
MCMC-scatterplots | Scatterplots of MCMC draws
MCMC-traces | Trace and rank plots of MCMC draws
mcmc_acf | General MCMC diagnostics
mcmc_acf_bar | General MCMC diagnostics
mcmc_areas | Plot interval estimates from MCMC draws
mcmc_areas_data | Plot interval estimates from MCMC draws
mcmc_areas_ridges | Plot interval estimates from MCMC draws
mcmc_areas_ridges_data | Plot interval estimates from MCMC draws
mcmc_combo | Combination plots
mcmc_dens | Histograms and kernel density plots of MCMC draws
mcmc_dens_chains | Histograms and kernel density plots of MCMC draws
mcmc_dens_chains_data | Histograms and kernel density plots of MCMC draws
mcmc_dens_overlay | Histograms and kernel density plots of MCMC draws
mcmc_hex | Scatterplots of MCMC draws
mcmc_hist | Histograms and kernel density plots of MCMC draws
mcmc_hist_by_chain | Histograms and kernel density plots of MCMC draws
mcmc_intervals | Plot interval estimates from MCMC draws
mcmc_intervals_data | Plot interval estimates from MCMC draws
mcmc_neff | General MCMC diagnostics
mcmc_neff_data | General MCMC diagnostics
mcmc_neff_hist | General MCMC diagnostics
mcmc_nuts_acceptance | Diagnostic plots for the No-U-Turn-Sampler (NUTS)
mcmc_nuts_divergence | Diagnostic plots for the No-U-Turn-Sampler (NUTS)
mcmc_nuts_energy | Diagnostic plots for the No-U-Turn-Sampler (NUTS)
mcmc_nuts_stepsize | Diagnostic plots for the No-U-Turn-Sampler (NUTS)
mcmc_nuts_treedepth | Diagnostic plots for the No-U-Turn-Sampler (NUTS)
mcmc_pairs | Scatterplots of MCMC draws
mcmc_parcoord | Parallel coordinates plot of MCMC draws
mcmc_parcoord_data | Parallel coordinates plot of MCMC draws
mcmc_rank_ecdf | Trace and rank plots of MCMC draws
mcmc_rank_hist | Trace and rank plots of MCMC draws
mcmc_rank_overlay | Trace and rank plots of MCMC draws
mcmc_recover_hist | Compare MCMC estimates to "true" parameter values
mcmc_recover_intervals | Compare MCMC estimates to "true" parameter values
mcmc_recover_scatter | Compare MCMC estimates to "true" parameter values
mcmc_rhat | General MCMC diagnostics
mcmc_rhat_data | General MCMC diagnostics
mcmc_rhat_hist | General MCMC diagnostics
mcmc_scatter | Scatterplots of MCMC draws
mcmc_trace | Trace and rank plots of MCMC draws
mcmc_trace_data | Trace and rank plots of MCMC draws
mcmc_trace_highlight | Trace and rank plots of MCMC draws
mcmc_violin | Histograms and kernel density plots of MCMC draws

## -- N --

neff_ratio | Extract quantities needed for plotting from model objects
neff_ratio.CmdStanMCMC | Extract quantities needed for plotting from model objects
neff_ratio.stanfit | Extract quantities needed for plotting from model objects
neff_ratio.stanreg | Extract quantities needed for plotting from model objects
NUTS | Diagnostic plots for the No-U-Turn-Sampler (NUTS)
nuts_params | Extract quantities needed for plotting from model objects
nuts_params.CmdStanMCMC | Extract quantities needed for plotting from model objects
nuts_params.list | Extract quantities needed for plotting from model objects
nuts_params.stanfit | Extract quantities needed for plotting from model objects
nuts_params.stanreg | Extract quantities needed for plotting from model objects

## -- O --

overlay_function | Convenience functions for adding or changing plot details

## -- P --

pairs_condition | Scatterplots of MCMC draws
pairs_style_np | Scatterplots of MCMC draws
panel_bg | Convenience functions for adding or changing plot details
param_glue | Tidy parameter selection
param_range | Tidy parameter selection
parcoord_style_np | Parallel coordinates plot of MCMC draws
plot_bg | Convenience functions for adding or changing plot details
PPC | Graphical posterior predictive checking
PPC-censoring | PPC censoring
PPC-discrete | PPCs for discrete outcomes
PPC-distributions | PPC distributions
PPC-errors | PPC errors
PPC-intervals | PPC intervals
PPC-loo | LOO predictive checks
PPC-overview | Graphical posterior predictive checking
PPC-scatterplots | PPC scatterplots
PPC-statistics | PPC test statistics
PPC-test-statistics | PPC test statistics
ppc_bars | PPCs for discrete outcomes
ppc_bars_data | PPCs for discrete outcomes
ppc_bars_grouped | PPCs for discrete outcomes
ppc_boxplot | PPC distributions
ppc_data | PPC distributions
ppc_dens | PPC distributions
ppc_dens_overlay | PPC distributions
ppc_dens_overlay_grouped | PPC distributions
ppc_dots | PPC distributions
ppc_ecdf_overlay | PPC distributions
ppc_ecdf_overlay_grouped | PPC distributions
ppc_error_binned | PPC errors
ppc_error_data | PPC errors
ppc_error_hist | PPC errors
ppc_error_hist_grouped | PPC errors
ppc_error_scatter | PPC errors
ppc_error_scatter_avg | PPC errors
ppc_error_scatter_avg_grouped | PPC errors
ppc_error_scatter_avg_vs_x | PPC errors
ppc_freqpoly | PPC distributions
ppc_freqpoly_grouped | PPC distributions
ppc_hist | PPC distributions
ppc_intervals | PPC intervals
ppc_intervals_data | PPC intervals
ppc_intervals_grouped | PPC intervals
ppc_km_overlay | PPC censoring
ppc_km_overlay_grouped | PPC censoring
ppc_loo_intervals | LOO predictive checks
ppc_loo_pit | LOO predictive checks
ppc_loo_pit_data | LOO predictive checks
ppc_loo_pit_ecdf | LOO predictive checks
ppc_loo_pit_overlay | LOO predictive checks
ppc_loo_pit_qq | LOO predictive checks
ppc_loo_ribbon | LOO predictive checks
ppc_pit_ecdf | PPC distributions
ppc_pit_ecdf_grouped | PPC distributions
ppc_ribbon | PPC intervals
ppc_ribbon_data | PPC intervals
ppc_ribbon_grouped | PPC intervals
ppc_rootogram | PPCs for discrete outcomes
ppc_scatter | PPC scatterplots
ppc_scatter_avg | PPC scatterplots
ppc_scatter_avg_data | PPC scatterplots
ppc_scatter_avg_grouped | PPC scatterplots
ppc_scatter_data | PPC scatterplots
ppc_stat | PPC test statistics
ppc_stat_2d | PPC test statistics
ppc_stat_data | PPC test statistics
ppc_stat_freqpoly | PPC test statistics
ppc_stat_freqpoly_grouped | PPC test statistics
ppc_stat_grouped | PPC test statistics
ppc_violin_grouped | PPC distributions
PPD | Plots of posterior or prior predictive distributions
PPD-distributions | PPD distributions
PPD-intervals | PPD intervals
PPD-overview | Plots of posterior or prior predictive distributions
PPD-statistics | PPD test statistics
PPD-test-statistics | PPD test statistics
ppd_boxplot | PPD distributions
ppd_data | PPD distributions
ppd_dens | PPD distributions
ppd_dens_overlay | PPD distributions
ppd_dots | PPD distributions
ppd_ecdf_overlay | PPD distributions
ppd_freqpoly | PPD distributions
ppd_freqpoly_grouped | PPD distributions
ppd_hist | PPD distributions
ppd_intervals | PPD intervals
ppd_intervals_data | PPD intervals
ppd_intervals_grouped | PPD intervals
ppd_ribbon | PPD intervals
ppd_ribbon_data | PPD intervals
ppd_ribbon_grouped | PPD intervals
ppd_stat | PPD test statistics
ppd_stat_2d | PPD test statistics
ppd_stat_data | PPD test statistics
ppd_stat_freqpoly | PPD test statistics
ppd_stat_freqpoly_grouped | PPD test statistics
ppd_stat_grouped | PPD test statistics
pp_check | Posterior (or prior) predictive checks (S3 generic and default method)
pp_check.default | Posterior (or prior) predictive checks (S3 generic and default method)

## -- R --

rhat | Extract quantities needed for plotting from model objects
rhat.CmdStanMCMC | Extract quantities needed for plotting from model objects
rhat.stanfit | Extract quantities needed for plotting from model objects
rhat.stanreg | Extract quantities needed for plotting from model objects

## -- S --

scatter_style_np | Scatterplots of MCMC draws

## -- T --

theme_default | Default *bayesplot* plotting theme
tidy-params | Tidy parameter selection
trace_style_np | Trace and rank plots of MCMC draws

## -- V --

vline_0 | Convenience functions for adding or changing plot details
vline_at | Convenience functions for adding or changing plot details

## -- X --

xaxis_text | Convenience functions for adding or changing plot details
xaxis_ticks | Convenience functions for adding or changing plot details
xaxis_title | Convenience functions for adding or changing plot details

## -- Y --

yaxis_text | Convenience functions for adding or changing plot details
yaxis_ticks | Convenience functions for adding or changing plot details
yaxis_title | Convenience functions for adding or changing plot details