Package: batchtma
Title: Batch Effect Adjustments
Version: 0.2.0
Authors@R: 
    c(person(given = "Konrad",
           family = "Stopsack",
           role = c("aut", "cre"),
           email = "stopsack@post.harvard.edu",
           comment = c(ORCID = "0000-0002-0722-1311")),
    person(given = "Travis",
           family = "Gerke",
           role = c("aut"),
           email = "gerket@mskcc.org",
           comment = c(ORCID = "0000-0002-9500-8907")))
Description: Different adjustment methods for batch effects in biomarker data,
  such as from tissue microarrays. Some methods attempt to retain differences 
  between batches that may be due to between-batch differences in "biological"
  factors that influence biomarker values.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.3
biocViews:
Depends: R (>= 4.1.0)
Imports: broom (>= 0.7.0), dplyr (>= 1.0.4), geepack, ggplot2, limma,
        nnet, purrr (>= 0.3.0), quantreg, rlang (>= 0.4.0), stringr,
        tibble, tidyr (>= 1.1.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://stopsack.github.io/batchtma/,
        https://github.com/stopsack/batchtma/
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-02-23 17:37:59 UTC; stopsack
Author: Konrad Stopsack [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0722-1311>),
  Travis Gerke [aut] (ORCID: <https://orcid.org/0000-0002-9500-8907>)
Maintainer: Konrad Stopsack <stopsack@post.harvard.edu>
Repository: CRAN
Date/Publication: 2026-02-23 20:10:02 UTC
Built: R 4.6.0; ; 2026-04-30 07:31:33 UTC; unix
