.called_by              Called By
.parse_function         Parse Function
assertHE_example        Get path to assertHE example
check_init              Check and initialize a vector
check_markov_trace      Check Markov Trace
check_trans_prob_array
                        Check Transition Probability Array
check_trans_prob_mat    Check Transition Probability Matrix
create_prompt           Create a prompt for a LLM
define_app_server       Create Shiny app server logic
define_app_ui           Create Shiny app UI
extract_function_name   Extract function name from a string
find_files              find_files
find_folder_function_definitions
                        Creates summary of R files in folder with
                        functions defined within and locations.
find_function_calls_in_file
                        Find all function calls in file
find_function_calls_in_folder
                        Find specific function calls in a folder
find_function_definitions
                        Parses an R source file, returns function names
                        defined within.
find_next_vector_element
                        Find the next element of the vector after a
                        value
find_previous_vector_element
                        Find the previous element of the vector before
                        a value
get_active_functions    get all active functions that exist in the
                        global environment
get_file_cheers_classifications
                        Get cheers classification tags from a given
                        file
get_folder_cheers_classifications
                        Get cheers classification tags from a given
                        folder
get_foo_coverage        Get coverage by function
get_function_data       Retrieve Function data to a list
get_function_line       Extract function line in file path
get_function_path       Remove artefacts from file path
get_isolated_foo        Get Isolated Functions
get_roxygen_description
                        Get Title and Description from Parsed List
get_roxygen_description_from_foo
                        Get roxygen title and description from function
identify_dependencies   Identify Dependencies
locate_funcs            locate_funcs
make_closable_tab       Create closable shiny tab
plotNetwork             Plot Network
plot_PSA_stability      Plot cumulative mean Probabilistic Sensitivity
                        Analysis results
processNodes            Process Nodes
return_message          Extract the content from the output of the LLM
run_shiny_app           Run a Shiny app to host a network visualization
source_funcs            source_funcs
source_lines            source_lines
summarise_function_from_arguments_and_body
                        Summarise a function from its arguments and
                        body
summarise_function_with_LLM
                        Summarize a function using a Large Language
                        Model
summarise_model         Summarise the model functions in a single
                        folder.
visualise_project       Visualize Project
wrap_string             Wrap a string to lines of a specified width
