R: Data Management Tools for Pharmacometrics

# Data Management Tools for Pharmacometrics

## Documentation for package ‘amp.dm’ version 0.2.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

attr_add | Add attributes from a list to a dataframe
attr_extract | Extracts attributes from a data frame
attr_factor | Create factors for variables within a data frame using the format attribute
attr_xls | Reads in attributes from an external excel file
check_cat | Create an overview of the available categories
check_nmdata | Checks nonmem dataset for common errors/mistakes
cmnt | Add comment to environment to present in documentation
cmnt_print | Function that prints the comments given by cmnt
contents_df | Create information for multiple data frames
counts_df | Create counts and frequencies within in data frame
create_addl | Create ADDL data item and deletes unnecessary amount lines
define_tbl | Create define PDF file for submission of pharmacometric data files
egfr | Calculates EGFR values based on different types of formulas
expand_addl_ii | Expand rows in case ADDL and II variables are present
fill_dates | Fills down dates within a data frame that include a start and end date
filterr | Filter data with logging of results
flag_outliers | Creates a flag for outlying values
get_log | Retrieve log objects
get_script | Get the current script name (either interactive Rstudio, markdown or batch script)
impute_covar | Impute missing covariates
impute_dose | Imputes dose records using ADDL and II by looking forward and backwards
left_joinr | Perform a left join of two data frames with logging of results
log_df | Create information for all functions that log actions
make_readonly | Sets the read-only attribute for all files available within a folder
num_lump | Perform lumping of numerical values
output_data | export R data for NONMEM modeling
plot_vars | Creates different kind of plots for variables within a dataset using ggplot2
read_data | read external data with logging of results
session_tbl | Create information for R session
srce | Add source information to environment to present in documentation
stats_df | Calculate basic statistics on data frame
time_calc | Create time variables for usage in NONMEM analyses
weight_height | Calculates different weight variables