Package: ambiR
Type: Package
Title: Calculate AZTI’s Marine Biotic Index
Version: 0.1.1
Authors@R: c( 
    person("Ciarán J.", "Murray", ,"cjm@niva-dk.dk", role = c("aut", "cre", "cph"),
    comment = c(ORCID = "0000-0003-0260-2008")),
    person("Ángel", "Borja", ,"aborja@azti.es", role = "aut",
    comment = c(ORCID = "0000-0003-1601-2025")),
    person("Sarai", "Pouso", ,"spouso@azti.es", role = "aut",
    comment = c(ORCID = "0000-0003-3208-9882")),
    person("Iñigo", "Muxika", ,"imuxika@azti.es", role = "aut",
    comment = c(ORCID = "0000-0002-9181-3781")),
    person("Joxe Mikel", "Garmendia", ,"jgarmendia@azti.es", role = "aut",
    comment = c(ORCID = "0000-0002-9403-1777")),
    person("Steen", "Knudsen", ,"steen.knudsen@niva-dk.dk", role = "ctb",
    comment = c(ORCID = "0000-0003-0428-9940")),
    person("GES4SEAS", role = "fnd", comment = c("Grant Agreement 101059877 - GES4SEAS.
      The GES4SEAS project has been approved under the HORIZON-CL6-2021-BIODIV-01-04 call:
      'Assess and predict integrated impacts of cumulative direct and indirect stressors 
      on coastal and marine biodiversity, ecosystems and their services'. 
      Funded by the European Union. Views and opinions expressed are however 
      those of the authors only and do not necessarily reflect those of the 
      European Union or UK Research and Innovation. Neither the European Union 
      nor the granting authority can be held responsible for them."))
    )
Maintainer: Ciarán J. Murray <cjm@niva-dk.dk>
Description: Calculate AZTI’s Marine Biotic Index - AMBI. The included list of
    benthic fauna species according to their sensitivity
    to pollution. Matching species in sample data to the list allows the
    calculation of fractions of individuals in the different sensitivity
    categories and thereafter the AMBI index. The Shannon Diversity Index H'
    and the Danish benthic fauna quality index DKI (Dansk Kvalitetsindeks) can
    also be calculated, as well as the multivariate M-AMBI index.
    Borja, A., Franco, J. ,Pérez, V. (2000) "A marine biotic index to
    establish the ecological quality of soft bottom benthos within European 
    estuarine and coastal environments" <doi:10.1016/S0025-326X(00)00061-8>. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: spelling, testthat (>= 3.0.0), usethis, devtools, knitr,
        rmarkdown, ggplot2, scales
Config/testthat/edition: 3
RoxygenNote: 7.3.3
Depends: R (>= 3.5)
Imports: dplyr, tidyr, cli, magrittr, utils, stats
URL: https://niva-denmark.github.io/ambiR/,
        https://github.com/niva-denmark/ambiR/,
        https://github.com/NIVA-Denmark/ambiR
BugReports: https://github.com/NIVA-Denmark/ambiR/issues
Config/Needs/website: rmarkdown
VignetteBuilder: knitr
Language: en-GB
NeedsCompilation: no
Packaged: 2025-12-16 18:19:29 UTC; CJM
Author: Ciarán J. Murray [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-0260-2008>),
  Ángel Borja [aut] (ORCID: <https://orcid.org/0000-0003-1601-2025>),
  Sarai Pouso [aut] (ORCID: <https://orcid.org/0000-0003-3208-9882>),
  Iñigo Muxika [aut] (ORCID: <https://orcid.org/0000-0002-9181-3781>),
  Joxe Mikel Garmendia [aut] (ORCID:
    <https://orcid.org/0000-0002-9403-1777>),
  Steen Knudsen [ctb] (ORCID: <https://orcid.org/0000-0003-0428-9940>),
  GES4SEAS [fnd] (Grant Agreement 101059877 - GES4SEAS.  The GES4SEAS
    project has been approved under the HORIZON-CL6-2021-BIODIV-01-04
    call: 'Assess and predict integrated impacts of cumulative direct
    and indirect stressors on coastal and marine biodiversity,
    ecosystems and their services'.  Funded by the European Union.
    Views and opinions expressed are however those of the authors only
    and do not necessarily reflect those of the European Union or UK
    Research and Innovation. Neither the European Union nor the
    granting authority can be held responsible for them.)
Repository: CRAN
Date/Publication: 2025-12-19 20:30:02 UTC
Built: R 4.6.0; ; 2026-04-29 10:14:12 UTC; unix
