R: Automated and Early Detection of Seasonal Epidemic Onset and Burden Levels

# Automated and Early Detection of Seasonal Epidemic Onset and Burden Levels

## Documentation for package ‘aedseo’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

autoplot | Autoplot a 'tsd' object
autoplot.tsd | Autoplot a 'tsd' object
autoplot.tsd_growth_warning | Autoplot a 'tsd' object
autoplot.tsd_onset | Autoplot a 'tsd' object
autoplot.tsd_onset_and_burden | Autoplot a 'tsd' object
combined_seasonal_output | Compute seasonal onset and burden levels from seasonal time series observations.
consecutive_growth_warnings | Create a tsd_growth_warning object to count consecutive significant observations
epi_calendar | Determine Epidemiological Season
estimate_disease_threshold | Estimate the disease specific threshold of your time series data
fit_growth_rate | Fit a growth rate model to time series cases.
fit_percentiles | Fits weighted observations to distribution and returns percentiles
generate_seasonal_data | Generate Simulated Data of Seasonal Waves as a 'tsd' object
historical_summary | Summarises estimates like seasonal peak and onset from all available seasons
plot | Create a complete 'ggplot' appropriate to a particular data type
plot.tsd | Create a complete 'ggplot' appropriate to a particular data type
plot.tsd_growth_warning | Create a complete 'ggplot' appropriate to a particular data type
plot.tsd_onset | Create a complete 'ggplot' appropriate to a particular data type
plot.tsd_onset_and_burden | Create a complete 'ggplot' appropriate to a particular data type
predict.tsd_onset | Predict Cases for Future Time Steps
seasonal_burden_levels | Compute burden levels from seasonal time series observations of current season.
seasonal_onset | Automated and Early Detection of Seasonal Epidemic Onset
summary.tsd_burden_levels | Summary method for 'tsd_burden_levels' objects
summary.tsd_onset | Summary method for 'tsd_onset' objects
to_time_series | Create a tibble-like 'tsd' (time-series data) object from time series data and corresponding dates.