R: Peptide Array Analysis Tools

# Peptide Array Analysis Tools

## Documentation for package ‘VDAP’ version 2.0.0

- DESCRIPTION file

## Help Pages

aaDist | Position Independent Amino Acid Distributions
aaStruct | Positional Amino Acid Composition Calculations
Attrib | Calculate Peptide Length and Charge Attributes
Dups | Average duplicated peptides from a VDAP dataset
genPep | Peptide generator based on the output of functions 'vComp' or 'vMotif'
hitSel | Signal Based Hits Selection for VDAP
KdA | Peptide Dissociation Rate Constant (Kd) Calculations
lcScan | Signal or Kd Distributions separated by Length/Charge attributes
QCKd | Quality Control of Peptides Based on Reproducibility and Kd
QCon | Subsetting for VDAP function QCKd
resSep | Select Peptides with the Specified Amino Acid Residue(s) at an Indicated Position
vComp | Amino Acid Disbutions by Position at Various Length/Charge
vComp.l | Amino Acid Disbutions by Position at Various Length/Charge
vComp.lc | Amino Acid Disbutions by Position at Various Length/Charge
vFormat | Length/Charge/Kd Peptide Calculations and File Assembly
vMotif | Generate Signal Weighted Amino Acid Heat Maps by Position
vMotif.l | Generate Signal Weighted Amino Acid Heat Maps by Position
vMotif.lc | Generate Signal Weighted Amino Acid Heat Maps by Position
vSep | Select Peptides of a Particular Length/Charge Combination