R: FWER and FDR Controlling Procedures for Multiple Correlation Tests

# FWER and FDR Controlling Procedures for Multiple Correlation Tests

## Documentation for package ‘TestCor’ version 0.0.2.2

- DESCRIPTION file

## Help Pages

TestCor-package | FWER and FDR controlling procedures for multiple correlation tests
ApplyFdrCor | Applies multiple testing procedures built to control (asymptotically) the FDR for correlation testing.
ApplyFwerCor | Applies multiple testing procedures controlling (asymptotically) the FWER for tests on a correlation matrix.
ApplyFwerCor_oracle | Applies an oracle version of MaxTinfty procedure described in Drton & Perlman (2007) for correlation testing.
BHBootCor | Benjamini & Hochberg (1995)'s procedure for correlation testing with bootstrap evaluation of p-values.
BHCor | Benjamini & Hochberg (1995)'s procedure for correlation testing.
BonferroniCor | Bonferroni multiple testing procedure for correlations.
BonferroniCor_SD | Bonferroni multiple testing method for correlations with stepdown procedure.
BootRWCor | Bootstrap multiple testing method of Romano & Wolf (2005) for correlations.
BootRWCor_SD | Boootstrap multiple testing method of Romano & Wolf (2005) for correlations, with stepdown procedure.
covD2nd | Returns the theoretical covariance of empirical correlations.
covDcor | Returns the theoretical covariance of empirical correlations.
covDcorNorm | Returns the theoretical covariance of test statistics for correlation testing.
eval_stat | Evaluates the test statistics for tests on correlation matrix entries.
LCTboot | Bootstrap procedure LCT-B proposed by Cai & Liu (2016) for correlation testing.
LCTnorm | Procedure LCT-N proposed by Cai & Liu (2016) for correlation testing.
maxTinftyCor | Multiple testing method of Drton & Perlman (2007) for correlations.
maxTinftyCor_SD | Multiple testing method of Drton & Perlman (2007) for correlations, with stepdown procedure.
SidakCor | Sidak multiple testing procedure for correlations.
SidakCor_SD | Sidak multiple testing method for correlations with stepdown procedure.
SimuFdr | Simulates Gaussian data with a given correlation matrix and applies a FDR controlling procedure on the correlations.
SimuFwer | Simulates Gaussian data with a given correlation matrix and applies a FWER controlling procedure on the correlations.
SimuFwer_oracle | Simulates Gaussian data with a given correlation matrix and applies oracle MaxTinfty on the correlations.
TestCor | FWER and FDR controlling procedures for multiple correlation tests
UncorrectedCor | Uncorrected testing procedure for correlations.
unvectorize | Returns an upper-triangle matrix, without the diagonal, containing the elements of a given vector.
vectorize | Returns a vector containing the upper triangle of a matrix, without the diagonal.
whichCor | Returns the indexes of an upper triangular matrix with logical entries.