TcGSA-package           Time-course Gene Set Analysis
TcGSA.LR                Computing the Likelihood Ratios for the Gene
                        Sets under Scrutiny
TcGSA.LR.parallel       Parallel computing the Likelihood Ratios for
                        the Gene Sets under Scrutiny
clustTrend              Cluster the genes dynamics into different
                        dominant trends.
data_simu_TcGSA         Simulated Data for TcGSA
multtest.TcGSA          Computing the P-value of the Likelihood Ratios
                        Applying a Multiple Testing Correction
plot.TcGSA              Plot a Gene Set Trends Heatmap.
plot1GS                 Plotting a Specific Gene Set
plotFit.GS              Plotting function for exploring the fitness of
                        the mixed modeling used in TcGSA
plotMultipleGS          Plotting Multiple Gene Sets in a single plot
plotPat.1GS             Plotting a Specific Gene Set Stratifying on
                        Patients
plotPat.TcGSA           Plot a Gene Set Trends Heatmap for each
                        Patient.
plotSelect.GS           Plotting (several) Selected Gene Set(s) in some
                        Subjects
rchisqmix               Chi-Squared Mixtures Distribution
signifLRT.TcGSA         Identifying the Significant Gene Sets
summary.TcGSA           Summarizing TcGSA
