FWpoint.num.w.reg       Modified Fermat-Weber point numerical solver
                        for ultrametrics
FWpoint.numerical       Fermat-Weber point numerical solver
HAR.TLineSeg            Uniformly sample from a max-plus tropical line
                        segment
HAR.TLineSeg.centroid   Gaussian-like Sampling on a max- or min-plus
                        tropical line segment
Points.TLineSeg         Sample k equally spaced points on a max- or
                        min-plus tropical line segment
Sim_Trees1              Six data sets of phylogenetic trees data
                        simulated from the Coalescant model.
Sim_Trees2              Six data sets of phylogenetic trees data
                        simulated from the Coalescant model.
Sim_points              Simulated points over the tropical projective
                        torus
TKmeans                 K-means clustering over the tropical projective
                        torus
TLineSeg                Construct a max- or min-plus tropical line
                        segment between two points
TML                     Tropical Machine Learning in R
Trop_ball               Visualize a Tropical ball in 2D or 3D
Tropical.HC.AGNES       Agglomerative (AGNES) tropical hierarchical
                        clustering
Ultrametrics.HAR        Hit-and-Run Sampler for the space of
                        ultrametrics
VE.HAR                  Vertex HAR with extrapolation (VHE) MCMC with
                        uniform target distribution
bw.nn                   Nearest neighbor bandwidth calculation
cluster.ratio_HC        Ratio of within and between tropical measures
                        for tropical hierarchical clusters
cluster.ratio_KM        Ratio of within and between tropical measures
                        for k-means clusters
convert.to.tree         Create a phylogenetic tree from an ultrametric
draw.tpolytope          Draw a 2-D or 3-D tropical polytope
hyper_3D                2D or 3D rendering of max-plus or min-plus
                        tropical hyperplane
lung_fish               Phylogenetic trees based on lung fish data
max_ins.ball            Calculate the center point and radius of the
                        maximum inscribed ball for a tropical simplex
min_enc.ball            Calculate a minimum enclosing ball for a
                        tropical polytope
normaliz.tree           Normalize a phylogenetic tree
normalize               Normalize a point or set of points in the
                        tropical projective torus
over_bet_HC             Tropical cluster betweeness measure for each
                        cluster in a set of hierarchical clusters
over_bet_KM             Tropical cluster betweeness measure for a each
                        of a set of k-means derived set of clusters
pre.pplot.pro           Projections of points onto a tropical triangle
prob.class              Estimated probability for binary class
                        assignment
project.pi              Project a point on the tropical projective
                        torus onto a tropical polytope
pw.trop.dist            Constructs the dissimilarity matrix for a set
                        of ultrametrics
rounding                Remove all tentacles from a tropical simplex
sigmoid                 Sigmoid function
tdets                   Calculate the tropical determinant of a square
                        matrix.
tree.to.vector          Phylogenetic tree to vector
trop.FW                 Calculate the tropical Fermat-Weber point
trop.Volume             Estimate the volume of a tropical polytope
trop.bal.vert           Calculate the minimum or entire generating
                        vertex set of a tropical ball using a max- or
                        min-plus algebra
trop.dist               Compute the tropical distance
trop.hyper.dist         Calculate the tropical distance to a
                        max-tropical hyperplane
trop.logistic.regression
                        Tropical Logistic Regression
trop.tri.plot.w.pts     Plotting PCA-derived tropical triangles
trop_wi_dist            Tropical within-cluster measure
tropical.KDE            Tropical Kernel Density Estimation of
                        Phylogenetic Trees
tropical.PCA            Tropical principal component analysis (PCA) on
                        over tropical projective torus
tropical.centroid       Tropical centroid-based sampling about a center
                        of mass
tropical.centroid.MH    Centroid-based sampling using Metropolis filter
vector.to.equidistant.tree
                        Vector to equidistant tree
