R: Gene Network Inference from Time-Series Transcriptomic Data

# Gene Network Inference from Time-Series Transcriptomic Data

## Documentation for package ‘TDCor’ version 0.1-2

- DESCRIPTION file

## Help Pages

TDCor-package | TDCor algorithm for gene regulatory network inference
CalculateDPI | Generate the DPI database to be used by the TDCOR main function
CalculateTPI | Generate the TPI database to be used by the TDCOR main function
clean.at | Elimininate from a vector of gene codes the genes for which no data is available.
draw.profile | Plot the expression profile of a 'gene' in 'dataset'
estimate.delay | Estimate the time shift between two gene profiles and make a plot
LR_dataset | Lateral root transcriptomic dataset
l_genes | l_genes
l_names | l_names
l_prior | l_prior
shortest.path | Calculate the shortest path linking every pairs of nodes in the network
TDCOR | The TDCOR main function
TF | Table of 1834 Arabidopsis Transcription factors
times | The 'times' vector to use with the lateral root dataset
UpdateDPI | Update or check the DPI database
UpdateTPI | Update or check the TPI database