Package: SiFINeT
Type: Package
Title: Single Cell Feature Identification with Network Topology
Version: 1.13
Date: 2025-01-01
Author: Qi Gao [aut, cre]
Maintainer: Qi Gao <gqi@med.umich.edu>
Authors@R: person(given = "Qi",
                  family = "Gao",
                  role = c("aut", "cre"),
                  email = "gqi@med.umich.edu")
Description: Cluster-independent method based on topology structure of gene co-expression network for identifying feature gene sets, extracting cellular subpopulations, and elucidating intrinsic relationships among these subpopulations. Without prior cell clustering, SifiNet circumvents potential inaccuracies in clustering that may influence subsequent analyses. This method is introduced in Qi Gao, Zhicheng Ji, Liuyang Wang, Kouros Owzar, Qi-Jing Li, Cliburn Chan, Jichun Xie "SifiNet: a robust and accurate method to identify feature gene sets and annotate cells" (2024) <doi:10.1093/nar/gkae307>.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.1
NeedsCompilation: yes
BuildVignettes: yes
VignetteBuilder: knitr
Depends: R (>= 3.6.0), methods, utils, stats
Imports: Rcpp (>= 1.0.9), quantreg (>= 5.94), igraph (>= 1.3.5), Matrix
        (>= 1.5-1), ggraph (>= 2.0.6), ggplot2 (>= 3.3.6),
Suggests: rmarkdown (>= 2.20), knitr (>= 1.42)
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2025-01-15 22:31:46 UTC; gqi
Repository: CRAN
Date/Publication: 2025-01-16 15:10:05 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-30 16:46:14 UTC; unix
Archs: SiFINeT.so.dSYM
