EstNull                 EstNull This function is a Rcpp version of
                        Wenguang Sun and Tony T. Cai's EstNull.func R
                        function, estimating null distribution from
                        data. Sun, W., & Cai, T. T. (2007). Oracle and
                        Adaptive Compound Decision Rules for False
                        Discovery Rate Control. Journal of the American
                        Statistical Association, 102(479), 901–912.
SiFINeT-class           The SiFINeT Class
assign_shared_feature   assign_shared_feature
cal_coexp               cal_coexp This function calculates the
                        coexpression patterns between genes and returns
                        the coexpression matrix.
cal_coexp_sp            cal_coexp_sp This function calculates the
                        coexpression patterns between genes in sparse
                        matrix and returns the coexpression matrix.
cal_conn                cal_conn This function calculates the first 3
                        order connectivities for each gene and returns
                        the list of vectors of connectivities.
cal_connectivity        cal_connectivity
create_SiFINeT_object   create_SiFINeT_object
create_network          create_network
enrich_feature_set      enrich_feature_set
extract_subnetwork      extract_subnetwork
feature_coexp           feature_coexp
filter_lowexp           filter_lowexp
find_unique_feature     find_unique_feature
geneset_topology        geneset_topology
norm_FDR_SQAUC          norm_FDR_SQAUC The function controls the false
                        discovery rate (FDR) of coexpression patterns
                        using SQAUC method Jichun Xie and Ruosha Li.
                        "False discovery rate control for high
                        dimensional networks of quantile associations
                        conditioning on covariates". In: J R Stat Soc
                        Series B Stat Methodol (2018). doi:
                        10.1111/rssb.12288.
quantile_thres          quantile_thres
