HNscore                 Reproducing HN-scores from HN-ratios Using the
                        SRscore Package
MetadataABA             Metadata of abscisic acid stress microarray
                        dataset in _Arabidopsis thaliana_
MetadataHypoxia         Metadata of Hypoxia stress RNA-Seq dataset in
                        _Arabidopsis thaliana_
SRGA                    Test data for the SRscore package
SRratio_test            Test data for calculating SRratio using sample
                        data
SRscore_test            Test data for calculating SRscore using sample
                        data
TPMHypoxia              Hypoxia stress RNA-Seq data in _Arabidopsis
                        thaliana_
TranscriptomeABA        Abscisic acid stress microarray dataset in
                        _Arabidopsis thaliana_
calcSRratio             Calculate the Stress Response ratio (SRratio)
calcSRscore             Create a Data Frame of SRscore
directly_calcSRscore    Aggregate the results of the three functions
                        into a single list
expand_by_group         Create a data frame from all combinations
                        between two specified variables within each
                        group
find_diffexp            Find the expression ratio for each experimental
                        sample for the specified gene.
logHNratioHypoxia       Reproducing HN-scores from HN-ratios Using the
                        SRscore Package
plot_SRscore_distr      Plot the Distribution of SRscore Values
plot_SRscore_rank       Plot Ranked SRscore Values with Threshold-Based
                        Highlighting
plot_SRscore_top        Barplot of Top Genes Ranked by Absolute SRscore
sample_pair_test        Test data to create data frames from all
                        combinations between two specified variables
                        within each group using sample data
