R: Biclustering via Simplivariate Component Analysis

# Biclustering via Simplivariate Component Analysis

## Documentation for package ‘SIMPLICA’ version 1.0.0

- DESCRIPTION file

## Help Pages

additiveMatrix | Generate an additive approximation of a data matrix
additiveMatrixFitter | Additive Pattern Fitter
componentCVPatterns | Cross-Validation of Simplivariate Component Patterns
defaultPatternFitters | Default Pattern Fitters for SIMPLICA
defaultPatternFunctions | Default pattern generators for SIMPLICA
fitness | Fitness function with automatic pattern selection per Simplivariate Component
fitnessForOneComponent | Compute best pattern-based fitness for a single Simplivariate Component
gaintegerMutation | Integer mutation operator for genetic algorithms
gaintegerOnePointCrossover | One-point crossover operator for integer-encoded genetic algorithms
gaintegerPopulationFactory | GA Integer Population Factory
globals | Global Variables Declaration
multiplicativeMatrix | Generate an multiplicative approximation of a data matrix
multiplicativeMatrixFitter | Multiplicative Pattern Fitter
plotComponentResult | Plot non-contiguous simplivariate components by pattern type, with optional reordering
print.summaryComponents | Print method for summaryComponents
SCAMonitorFactory | Simplivariate Component Analysis monitoring function factory for GA progress
simplica | SIMPLICA: Simultaneous Identification of Simplivariate Components
simplicaCV | Test Simplivariate Components with Cross-Validation Pattern Selection
simplicaToy | Toy matrix with one multiplicative and one additive bicluster
summaryComponents | Summarize GA-found Simplivariate Components