R: Spectrally Deconfounded Models

# Spectrally Deconfounded Models

## Documentation for package ‘SDModels’ version 2.0.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

cvSDTree | Cross-validation for the SDTree
f_four | Function of x on a fourier basis
get_cp_seq | Get the sequence of complexity parameters of an SDForest
get_cp_seq.SDForest | Get the sequence of complexity parameters of an SDForest
get_cp_seq.SDTree | Get the sequence of complexity parameters of an SDTree
get_Q | Estimation of spectral transformation
get_W | Estimation of anchor transformation
mergeForest | Merge two forests
partDependence | Partial dependence
plot.partDependence | Plot partial dependence
plot.paths | Visualize the paths of an SDTree or SDForest
plot.SDForest | Plot performance of SDForest against number of trees
plot.SDTree | Plot SDTree
plotOOB | Visualize the out-of-bag performance of an SDForest
predict.SDAM | Predictions for SDAM
predict.SDForest | Predictions for the SDForest
predict.SDTree | Predictions for the SDTree
predictOOB | Out-of-bag predictions for the SDForest
predict_individual_fj | Predictions of individual component functions for SDAM
print.partDependence | Print partDependence
print.SDAM | Print SDAM
print.SDForest | Print SDForest
prune | Prune an SDForest
prune.SDForest | Prune an SDForest
prune.SDTree | Prune an SDTree
regPath | Calculate the regularization path of an SDForest
regPath.SDForest | Calculate the regularization path of an SDForest
regPath.SDTree | Calculate the regularization path of an SDTree
SDAM | Spectrally Deconfounded Additive Models
SDForest | Spectrally Deconfounded Random Forests
SDTree | Spectrally Deconfounded Tree
simulate_data_nonlinear | Simulate data with linear confounding and non-linear causal effect
simulate_data_step | Simulate data with linear confounding and causal effect following a step-function
stabilitySelection | Calculate the stability selection of an SDForest
stabilitySelection.SDForest | Calculate the stability selection of an SDForest
varImp | Extract variable importance of an SDForest
varImp.SDAM | Extract Variable importance for SDAM
varImp.SDForest | Extract variable importance of an SDForest
varImp.SDTree | Extract variable importance of an SDTree