all_trees               Simulated Tree Data with Different Proximity
                        Parameter Value
apicomplexa             Apicomplexa gene trees sample data set.
as.matrix.multiPhylo    Vectorize a Set of Phylognetic Trees
as.vector.phylo         Vectorize a Phylogenetic Tree
coef.cv.tropsvm         Extract Optimal Tropical Hyperplane from a
                        cv.tropsvm object
coef.tropsvm            Extract Optimal Tropical Hyperplane from a
                        tropsvm object
cv.tropsvm              Cross-Validation for Tropical Support Vector
                        Machines
lungfish                Coelacanths genome and transcriptome data
plot.troppca            Plot the Tropical Principal Components with
                        Data Projections
predict.cv.tropsvm      Predict Method for Tropical Support Vector
                        Machines based on Cross-Validation
predict.tropsvm         Predict Method for Tropical Support Vector
                        Machines
read.nexus.to.data.matrix
                        Read NEXUS-formatted trees from two categories
                        into a data matrix
read.tree.to.data.matrix
                        Read Newick-formatted trees in two categories
                        into a data matrix
sim_trees               Simulated Tree Data
summary.cv.tropsvm      Summarize an Analysis of Cross-Validated
                        Tropical Support Vector Machine
tropFW                  Tropical Fermat-Weber Point
tropdet                 Tropical Determinant of a Matrix
troppca.linsp           Tropical Principal Component Analysis by
                        Tropical Linear Space
troppca.linsp2poly      Tropical Principal Component Analysis by
                        Polytope Converted from Linear Space
troppca.poly            Tropical Principal Component Analysis by
                        Tropical Polytope
tropproj.linsp          Projection on Tropical Linear Space
tropproj.poly           Projection on Tropical Polytope
tropsvm                 Tropical Support Vector Machines
