@String{CRAN = "https://CRAN.R-Project.org/" }

@Manual{Bioc:BiocNeighbors,
  title =        {BiocNeighbors: Nearest Neighbor Detection for
                  Bioconductor Packages},
  author =       {Aaron Lun},
  year =         2025,
  doi =          {10.18129/B9.bioc.BiocNeighbors},
  url =          {https://bioconductor.org/packages/BiocNeighbors},
  note =         {R package version 2.4.0},
}

@Manual{CRAN:Rcpp,
  title =	 {{Rcpp}: Seamless {R} and {C++} Integration},
  author =	 {Dirk Eddelbuettel and Romain Fran\c{c}ois and JJ
                  Allaire and Kevin Ushey and Qiang Kou and
                  Nathan Russel and John Chambers and Douglas Bates},
  year =	 2026,
  note =	 {R package version 1.1.1},
  doi =          {10.32614/CRAN.package.Rcpp},
  url =		 CRAN # "package=Rcpp"
}

@Manual{CRAN:RcppAnnoy,
  title =	 {RcppAnnoy: {Rcpp} Bindings for {Annoy}, a Library for Approximate Nearest Neighbors},
  author = 	 {Dirk Eddelbuettel},
  year =	 2026,
  note =	 {R package version 0.0.23},
  doi =          {10.32614/CRAN.package.RcppAnnoy},
  url =		 CRAN # "package=RcppAnnoy"
}

@Book{Eddelbuettel:2013:Rcpp,
  author =	 {Dirk Eddelbuettel},
  title =	 {Seamless R and C++ Integration with Rcpp},
  publisher =	 {Springer},
  series =	 {Use R!},
  year =	 2013,
  address =	 {New York},
  doi =          {10.1007/978-1-4614-6868-4},
  isbn =	 {978-1-4614-6867-7}
}

@Manual{Github:annoy,
  author =       {Erik Bernhardsson},
  title =        {Annoy: Approximate Nearest Neighbors in C++/Python},
  year =         2023,
  note =	 {Python package version 1.17.2},
  url =          {https://github.com/spotify/annoy}
}

@Article{JSS:Rcpp,
  title =	 {{Rcpp}: Seamless {R} and {C++} Integration},
  author =	 {Dirk Eddelbuettel and Romain Fran\c{c}ois},
  journal =	 {Journal of Statistical Software},
  year =	 2011,
  volume =	 40,
  number =	 8,
  pages =	 {1--18},
  url =		 {http://www.jstatsoft.org/v40/i08/},
  doi =          {10.18637/jss.v040.i08>}
}

@Article{Lun+Richard+Marioni:2017,
  author =       {Aaron T. L. Lun and Arianne C. Richard and John
                  C. Marioni},
  title =        {Testing for differential abundance in mass cytometry
                  data},
  journal =      {Nat. Methods},
  year =         2017,
  volume =       14,
  number =       7,
  pages =        {707--709},
  month =        {Jul},
  doi =          {10.1038/nmeth.4295}
}

@Article{TAS:Rcpp,
  author =       {Dirk Eddelbuettel and James Joseph Balamuta},
  title =        {Extending R with C++: A Brief Introduction to Rcpp},
  journal =      {The American Statistician},
  volume =       72,
  number =       1,
  year =         2018,
  month =        {August},
  doi =          {10.1080/00031305.2017.1375990}
}

@Article{Wang:2012,
  author =       {Xueyi Wang},
  title =        {A fast exact k-nearest neighbors algorithm for high
                  dimensional search using k-means clustering and
                  triangle inequality},
  journal =      {Proc Int Jt Conf Neural Netw},
  year =         2012,
  volume =       43,
  number =       6,
  pages =        {2351--2358},
  month =        {Feb},
  doi =          {10.1016/j.patcog.2010.01.003}
}
