# Generated by roxygen2: do not edit by hand

S3method(print,RRphyloList)
export(PGLS_fossil)
export(RRphylo)
export(StableTraitsR)
export(addShift)
export(angle.matrix)
export(colorbar)
export(compRates)
export(conv.map)
export(cutPhylo)
export(distNodes)
export(evo.dir)
export(fix.poly)
export(getGenus)
export(getMommy)
export(getSis)
export(lollipoPlot)
export(makeFossil)
export(makeL)
export(makeL1)
export(move.lineage)
export(namesCompare)
export(node.paths)
export(overfitPGLS)
export(overfitRR)
export(overfitSC)
export(overfitSS)
export(overfitST)
export(phyloclust)
export(plotConv)
export(plotRR)
export(plotRates)
export(plotShift)
export(plotTrend)
export(random.evolvability.test)
export(rate.map)
export(rateHistory)
export(resampleTree)
export(rescaleRR)
export(retrieve.angles)
export(scaleTree)
export(search.conv)
export(search.shift)
export(search.trend)
export(setBM)
export(sig2BM)
export(sizedsubtree)
export(swap.phylo)
export(swapONE)
export(tips)
export(tree.merger)
export(treeCompare)
export(treedataMatch)
importFrom(ape,Nnode)
importFrom(ape,Ntip)
importFrom(ape,axisPhylo)
importFrom(ape,bind.tree)
importFrom(ape,cophenetic.phylo)
importFrom(ape,corPagel)
importFrom(ape,di2multi)
importFrom(ape,dist.nodes)
importFrom(ape,drop.tip)
importFrom(ape,extract.clade)
importFrom(ape,getMRCA)
importFrom(ape,is.binary)
importFrom(ape,ladderize)
importFrom(ape,multi2di)
importFrom(ape,nodelabels)
importFrom(ape,pic)
importFrom(ape,plot.phylo)
importFrom(ape,read.tree)
importFrom(ape,subtrees)
importFrom(ape,vcv)
importFrom(ape,write.tree)
importFrom(ape,zoom)
importFrom(doParallel,registerDoParallel)
importFrom(emmeans,emmeans)
importFrom(emmeans,emtrends)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(grDevices,chull)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,pairs)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,strheight)
importFrom(graphics,strwidth)
importFrom(graphics,symbols)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(phytools,bind.tip)
importFrom(phytools,drop.clade)
importFrom(phytools,fastAnc)
importFrom(phytools,fastBM)
importFrom(phytools,getDescendants)
importFrom(phytools,nodeHeights)
importFrom(stats,TukeyHSD)
importFrom(stats,aov)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,coefficients)
importFrom(stats,confint)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,lm)
importFrom(stats,logLik)
importFrom(stats,manova)
importFrom(stats,median)
importFrom(stats,model.frame)
importFrom(stats,na.omit)
importFrom(stats,optim)
importFrom(stats,predict)
importFrom(stats,princomp)
importFrom(stats,quantile)
importFrom(stats,resid)
importFrom(stats,residuals)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,terms)
importFrom(stats,update)
importFrom(stats,var)
importFrom(stats,weighted.mean)
importFrom(stats,xtabs)
importFrom(utils,adist)
importFrom(utils,combn)
importFrom(utils,globalVariables)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
importFrom(utils,write.table)
