.callGeneric            Calls the given generic with the given
                        arguments
.methodWithNext         Saves the next method in the method meta data
.sigLabel               Create a label for a method signature
Annotated-class         Class of objects that have metadata as lists of
                        meta elements
New                     new with namespaced class name
add_basic_meta          Add basic metadata
add_characters          Add character data to a nexml object
add_meta                Add metadata to a nexml file
add_namespaces          Add namespaces
add_trees               add_trees
c,meta-method           Concatenate meta elements into a ListOfmeta
c,nexml-method          Concatenate nexml files
charzero_as_empty       Treats zero-length character vectors as empty
                        strings
coalesce_               Front-end to dplyr::coalesce to deal with NULL
                        vectors
expand_prefix           Expand namespace-prefixed string
findNextMethod          Finds the method that callNextMethod() should
                        chain to
flatten_multiphylo      Flatten a multiphylo object
get_all_meta            Get flattened list of meta annotations
get_characters          Get character data.frame from nexml
get_characters_list     Extract the character matrix
get_citation            Get citation from metadata
get_flat_trees          get_flat_trees
get_level               get_level
get_license             Get license from metadata
get_meta                Extracts meta objects matching properties
get_metadata            get_metadata
get_metadata_values     Get the value(s) for metadata
get_namespaces          get namespaces
get_rdf                 Extract rdf-xml from a NeXML file
get_taxa                get_taxa
get_taxa_list           get_taxa_list
get_trees               extract a phylogenetic tree from the nexml
get_trees_list          extract all phylogenetic trees in ape format
lcapply                 Compact list then lapply
meta                    Constructor function for metadata nodes
nexml-class             Class representing a NeXML document
nexml.tree              Constructor for the respective class
nexml_add               add elements to a new or existing nexml object
nexml_figshare          publish nexml to figshare
nexml_get               Get the desired element from the nexml object
nexml_publish           publish nexml files to the web and receive a
                        DOI
nexml_read              Read NeXML files into various R formats
nexml_validate          validate nexml using the online validator tool
nexml_write             Write nexml files
reset_id_counter        reset id counter
simmap_to_nexml         Convert phylo with attached simmap to nexml
                        object
slot,ResourceMeta-method
                        Access or set slot of S4 object
summary,nexml-method    Summary method for nexml objects
taxize_nexml            taxize nexml
toPhylo                 nexml to phylo
