BoxCox                  One-parameter Box-Cox transformation.
RIbench-package         RIbench: Benchmark Suite for the Standardized
                        Evaluation of Indirect Methods for Reference
                        Interval Estimation
addGrid                 Add a grid to an existing plot.
as.rgb                  Convert color-names or RGB-code to possibly
                        semi-transparent RGB-code.
computeDirect           Function to simulate the direct method
computePerfMeas         Function for computing performance measurements
computePerfMeasAll      Function for computing reference intervals for
                        all markers
computeRIs              Function for computing reference intervals
computeRIsAll           Function for computing reference intervals for
                        all markers
computeRuntimeAll       Function to compute runtime statistics for all
                        analytes
computeSubResults       Helper function to compute the subscores for
                        the distribution types and the mentioned
                        categories
defineSubset            Function for defining a subset that is used for
                        analyizing the computation time and can be used
                        for other subanalyses.
evaluateAlgorithmResults
                        Convenience Function to generate all result
                        plots and calculate the benchmark score
evaluateBiomarkerTestSets
                        Wrapper function to evaluate all test sets or a
                        specified subset for a specified algorithm.
formatNumber            Rounding method with trailing zeros.
generateBiomarkerTestSets
                        Convenience function to generate simulated data
                        and save each test set as a separate file
generateBoxPlotOneAnalyte
                        Wrapper function to generate one boxplot for a
                        specified analyte
generateBoxplotsDistTypes
                        Wrapper function to generate all boxplots for
                        the specified distribution types split by
                        defined categories
generateBoxplotsMultipleCats
                        Wrapper function to generate all boxplots for
                        the specified analytes split by defined
                        categories
generateDataFiles       Generate simulated data with one start seed for
                        each biomarker and save each test set as
                        separate file
generateMD5             Generate an MD5 hash sum for any R object.
generateScatterplotsAll
                        Wrapper function to generate scatterplots for
                        the specified analytes
getBenchmarkResults     Computing benchmark table with the mean overall
                        results.
getRI                   Method to calculate reference intervals
                        (percentiles) for objects of class 'RWDRI'
getRIsAllwithoutModel   Function for retrieving reference intervals if
                        directly computed
getRuntime              Helper function to compute runtime statistics
getSubset               Function to group the data according to a
                        specified feature.
getSubsetForDefinedCats
                        Function to group the data according to a
                        specified feature.
invBoxCox               Inverse of the one-parameter Box-Cox
                        transformation.
loadTestsetDefinition   Convenience function to load the table with the
                        information about the pre-defined test sets
mergeAnalytes           Function to combine analytes for defined
                        categories
mergeSummaryErrors      Helper function to combine all computed summary
                        errors
plotBarplot             Plot method for generating a barplot out of the
                        benchmark results
plotBoxplot             Plot method for generating a boxplot of the
                        benchmark results
plotScatterplot         Plot method for generating a scatterplot
print.RWDRI             Standard print method for objects of class
                        'RWDRI'
progressInd             Function for setting up the progress indicator.
readResultFiles         Function for reading in the result files for
                        one marker
readResultFilesAll      Function for reading all results files.
readResultsAndComputeErrors
                        Function to read the result files and compute
                        performance measures to create customized plots
                        afterwards
restrictSet             Function to get error subsets for defined
                        category and restriction.
runDirectMethod         Convenience function to simulate the direct
                        method for the specified subset
runTC_usingRscript      Function for running test sets per algorithm
                        per marker with calling Rscript for each test
                        set
setupDirStructure       Convenience function to set up the directory
                        structure used for storing data and results.
writeResFile            Helper function to write result file when time
                        out occured or R session terminated
