---
title: "RFlocalfdr Report"
author: "RFlocalfdr"
date: "`r Sys.Date()`"
output: pdf_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
# knitr::opts_chunk$set(echo = TRUE, fig.width = 12, fig.height = 12)
```


```{r load-libraries,echo=FALSE}
library(knitr)
```
# Initial plots



```{r  , echo=FALSE, out.width = '50%'}
knitr::include_graphics("density_importances.png")
```
The data
 
 
 
```{r  , echo=FALSE,  out.width = '50%'}
knitr::include_graphics("histogram_of_variable_importances.png")
```
Spline and count fit

```{r , echo=FALSE, out.width = '50%'}
knitr::include_graphics("histogram_of_variable_importances.png")
```

```{r  , echo=FALSE, out.width = '50%'}
 knitr::include_graphics("density_importances2.png") 
``` 
density importances 2

```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("fit_to_data_set_initial.png") 
``` 
fit to data set initial


```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("local_fdr_initial.png") 
``` 
local fdr initial


# determine the value "C"

```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("determine_cc.png") 
``` 
determine cc

```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("compare_C_and_cc_and_the_resulting_fits.png") 
``` 
compare_C_and_cc_and_the_resulting_fits.png"


```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("fit_to_data_set_C.png") 
``` 
fit to data set C

```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("fit_to_data_set_cc.png") 
``` 
fit to data set cc


```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("compare_C_and_cc_and_the_resulting_fits_2.png") 
``` 
compare C and cc and the resulting fits2


# final plots

```{r  , echo=FALSE,  out.width = '50%'} 
knitr::include_graphics("fit_to_data_set_final.png") 
``` 
fit to data set final

```{r  , echo=FALSE,  out.width = '50%'} 
knitr::include_graphics("fit.to.data.set_df2.png") 
``` 
fit to data set df2



```{r  , echo=FALSE, out.width = '50%'} 
knitr::include_graphics("local_fdr_final.png") 
``` 
local fdr final



