R: Tools to Analyse RFLP Data

# Tools to Analyse RFLP Data

## Documentation for package ‘RFLPtools’ version 2.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

RFLPtools-package | Tools To Analyse RFLP-Data
BLASTdata | Example data set for BLAST data
diffDist | Distance Matrix Computation
FragMatch | Compute matches for RFLP data via FragMatch.
germ | Compute matches for RFLP data via GERM.
linCombDist | Linear Combination of Distances
newDataGerm | Example data set from GERM software
nrBands | Function to compute number of bands.
read.blast | Read BLAST data
read.rflp | Read RFLP data
refDataGerm | Example data set from GERM software
RFLPcombine | Combine RFLP data sets
RFLPdata | Example data set for RFLP data
RFLPdist | Compute distances for RFLP data.
RFLPdist2 | Compute distances for RFLP data.
RFLPdist2ref | Compute distance between RFLP data and RFLP reference data.
RFLPlod | Remove bands below LOD
RFLPplot | Function to plot RFLP data.
RFLPqc | Quality control for RFLP data
RFLPref | Example data set for RFLP reference
RFLPrefplot | Function for a visual comparison of RFLP samples with reference samples.
RFLPtools | Tools To Analyse RFLP-Data
sim2dist | Convert similarity matrix to dist object.
simMatrix | Similarity matrix for BLAST data.
simulateRFLPdata | Simulate RFLP data.
write.hclust | Cut a hierarchical cluster tree and write cluster identifiers to a text file.