RCircos-package         Circos-like Plot of Genomic Data
RCircos.Adjust.Scatter.Values
                        Adjust Scatter Plot Data to Fit the Data Track
RCircos.Area.Highlight
                        Highlight PLot Area Cross One or More Tracks
RCircos.Area.Plot       Paint Areas on One Data Track
RCircos.Chromosome.Ideogram.Plot
                        Plot Chromosome Ideogram
RCircos.Clear.Track     Erase One or More Data Tracks
RCircos.Clear.Zoom.Area
                        Erase Zoom-in Plot Area
RCircos.Customized.Connection.Plot
                        Draw Connectors between Chromosome Ideogram and
                        Gene Names
RCircos.Customized.Shape.Plot
                        Plot A Customized Shape
RCircos.Data.Point      Convert A Genomic Position to An Index of
                        Circos Plot Position
RCircos.Env             RCircos Environment
RCircos.Gene.Connector.Plot
                        Draw Connectors between Chromosome Ideogram and
                        Gene Names
RCircos.Gene.Label.Data
                        Sample Data for Gene Labels
RCircos.Gene.Name.Plot
                        Draw Gene Names on a Data Track
RCircos.Get.Arrow.Shape
                        Get Default Coordinates for An Arrow Shape
RCircos.Get.Chromosome.Order
                        Find the order of Chromosome Names
RCircos.Get.Data.Point.Height
                        Calculate the Height of Data in A Track
RCircos.Get.Default.Circos.Units
                        Retrieve Parameter Values Stored in RCircos
                        Environment
RCircos.Get.Gene.Label.Locations
                        Calculate Plot Positions for Gene Labels
RCircos.Get.Gene.Name.Plot.Parameters
                        Calculate Parameters for Gene Name Plot
RCircos.Get.Heatmap.Color.Scale
                        Generate Color Scales for Heatmap Plot
RCircos.Get.Heatmap.Color.Scale.Location
                        Calculate X and Y Coordinates for Color Scale
RCircos.Get.Heatmap.Data.Colors
                        Set Colors for One Track of Heatmap
RCircos.Get.Link.Colors
                        Set up Colors for Link Lines or Ribbons
RCircos.Get.Paired.Points.Positions
                        Calcualte Plot Positions for A Genomic Interval
RCircos.Get.Plot.Boundary
                        Calculate Boundary of A Data Track
RCircos.Get.Plot.Colors
                        Assign Plot Colors for Non-Link Data Plot
RCircos.Get.Plot.Layers
                        Get the Layer Numbers for Tile Plot
RCircos.Get.Plot.Parameters
                        Methods to Retrieve RCircos Core Components
                        Used in Current RCircos Session
RCircos.Get.Polygon.Height
                        Calculate the Height of Polygons in A Data
                        Track
RCircos.Get.Single.Point.Positions
                        Calculate Plot Positions for Genomic Data
RCircos.Get.Start.End.Locations
                        Calculate Start and End Positions for Plot Data
RCircos.Get.Track.Positions
                        Calculate Plot Positions for A Data Track
RCircos.Get.Zoom.Data   Retriev Subset of Plot Data for Zoom
RCircos.Get.Zoom.Range
                        Retrieve Genomic Interval from Genomic Data for
                        Zoom Plot
RCircos.Heatmap.Data    Sample Data for RCircos Heatmap Plot
RCircos.Heatmap.Plot    Draw Heatmap for One Data Track
RCircos.Histogram.Data
                        Sample Data for RCircos Histogram Plot
RCircos.Histogram.Plot
                        Plot Histogram for One Data Track
RCircos.Initialize.Plot.Parameters
                        Initialize RCircos Plot Parameters
RCircos.Line.Data       Sample Data for RCircos Line Plot
RCircos.Line.Plot       Draw Lines for One Data Track
RCircos.Link.Data       Sample Data for RCircos Link Plot
RCircos.Link.Line       Calculate x and y Coordinates for a Bezire
                        Curve
RCircos.Link.Plot       Draw Link Lines between Two or More Genomic
                        Positions
RCircos.List.Plot.Parameters
                        List RCircos Plot Parameters
RCircos.Mouse.Expr.Data
                        Sample Data of Mouse Gene Expression
RCircos.Multiple.Species.Core.Components
                        Setup RCircos Core Components with Multiple
                        Species Genomes
RCircos.Multiple.Species.Dataset
                        Combine Multiple Data Sets form Different
                        Genomes
RCircos.Parallel.Line.Plot
                        Draw Lines between Two Genomic Positions on
                        Same Chromosome
RCircos.Plot.Heatmap.Color.Scale
                        Plot A Color Scale for Heatmap
RCircos.Plot.Zoomed.Area
                        Zoomed-in Plot of Small Genomic Region
RCircos.Point.Plot      Point Plot for One Data Track
RCircos.Polygon.Data    RCircos Polygon Demo Data
RCircos.Polygon.Plot    Draw Polygons on One Data Track
RCircos.Pseudo.Ideogram.From.Labels
                        Generate A Pseudo Chromosome Ideogram from List
                        of Lables
RCircos.Pseudo.Ideogram.From.Table
                        Generate Pseudo Chromosome Ideogram from Plot
                        Data Table
RCircos.Rat.Expr.Data   Sample Data of Rat Gene Expression
RCircos.Reset.Plot.Ideogram
                        Reset Methods for Modifying RCircos Core
                        Components
RCircos.Ribbon.Data     Sample Data for RCircos Ribbon Plot
RCircos.Ribbon.Plot     Draw Ribbon between Two Genomic Regions
RCircos.Scatter.Data    Sample Data for RCircos Scatter Plot
RCircos.Scatter.Plot    Scater Plot for One Data Track
RCircos.Set.Base.Plot.Positions
                        Setup Base Plot Positions
RCircos.Set.Core.Components
                        Initialize Core Components for RCircos Plot
RCircos.Set.Cytoband.Data
                        Set Chromosome Cytoband Data for Circos Plot
RCircos.Set.Plot.Area   Setup Plot Area for RCircos Plot
RCircos.Set.Zoom.Plot.Positions
                        Set Position for Zoom-in Plot
RCircos.Sort.Genomic.Data
                        Sort Genomic or Ideogram Data
RCircos.Tile.Data       Sample Data for RCircos Tile Plot
RCircos.Tile.Plot       Plot Tiles for One Data Track
RCircos.Track.Outline   Draw Outline for A Data Track
RCircos.Validate.Cyto.Info
                        Validate Chromosome Ideogram Information
RCircos.Validate.Genomic.Data
                        Validate Genomic Data
RCircos.Validate.Genomic.Info
                        Validate Genomic Information
RCircos.Validate.Plot.Parameters
                        Validate Plot Parameters
RCircos.Validate.Track.Positions
                        Validate Track Positions
RCircos.Vertical.Line.Plot
                        Draw Vertical Lines on One Data Track
RCircos.Workflow        A Simple RCircos Plot Workflow
RCircos.Zoom.Area.Outline
                        Draw Outline for Zoom Plot Area
RCircos.Zoom.Paired.Plot.Positions
                        Calculate Zoomed Index of Circos Plot Positions
                        for Genomic Intervals
RCircos.Zoom.Single.Plot.Positions
                        Calculate Zoomed Index of Circos Plot Positions
                        for Single Point Genomic Data
RCircos.ZoomIn.Chromosome
                        Zoom in One or Partial Chromosome Ideogram
RCircos.ZoomOut.Chromosome
                        Zoom out Chromosome Ideogram
RCircos.defaultBasePerUnits
                        The Default Base Pair Number of A Circos Unit
RCircos.defaultCharWidth
                        Default Character With in Circos Unit
RCircos.defaultChromPadding
                        The Default Value of GAP in Circos (Chromosome)
                        Unit between two Chromosome Ideogram
RCircos.defaultCircosUnits
                        Default Circos Units for RCircos
RCircos.defaultTextSize
                        Default Character Size of RCircos Plot
RCircos.heatmapColors   Heatmap Colors Supported by Current Version of
                        RCircos
RCircos.paddingConst    Padding Distance Constant between Two
                        Chromosomes
RCircos.plotTypes       Plot Types Supported by Current RCircos Version
UCSC.Baylor.3.4.Rat.cytoBandIdeogram
                        Cytoband Information for Rat Chromosome
                        Ideogram
UCSC.HG19.Human.CytoBandIdeogram
                        Cytoband Information for Human Chromosome
                        Ideogram
UCSC.HG38.Human.CytoBandIdeogram
                        Human Chromosome Ideogram Version 38
UCSC.Mouse.GRCm38.CytoBandIdeogram
                        Cytoband Inforamtion for Mouse Chromosome
                        Ideogram
