# Generated by roxygen2: do not edit by hand

export(downloadGEO)
export(getCePaPathwayCatalogue)
export(getCommonDEGenes)
export(getCommonPathways)
export(getEntrezAnnotation)
export(getGeneSets)
export(getSPIAKEGGNetwork)
export(getSupportedPlatforms)
export(loadData)
export(plotBarChart)
export(plotDEGeneHeatmap)
export(plotForest)
export(plotKEGGMap)
export(plotMA)
export(plotPathwayHeatmap)
export(plotPathwayNetwork)
export(plotVennDE)
export(plotVennPathway)
export(plotVolcanoDE)
export(plotVolcanoPathway)
export(processAffymetrix)
export(processAgilent)
export(runConsensusAnalysis)
export(runDEAnalysis)
export(runDEMetaAnalysis)
export(runGeneSetAnalysis)
export(runPathwayAnalysis)
export(runPathwayMetaAnalysis)
importFrom(AnnotationDbi,keys)
importFrom(Biobase,annotation)
importFrom(Biobase,exprs)
importFrom(Biobase,pData)
importFrom(BiocManager,install)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(GEOquery,getGEO)
importFrom(GEOquery,getGEOSuppFiles)
importFrom(RobustRankAggreg,aggregateRanks)
importFrom(RobustRankAggreg,rankMatrix)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,first)
importFrom(dplyr,group_by)
importFrom(dplyr,group_split)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,summarize_all)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(edgeR,topTags)
importFrom(ggnewscale,new_scale_fill)
importFrom(ggpattern,geom_bar_pattern)
importFrom(ggpattern,scale_pattern_manual)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,annotation_custom)
importFrom(ggplot2,annotation_raster)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_errorbarh)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,labs)
importFrom(ggplot2,layer_scales)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_discrete)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_discrete)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,sec_axis)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_void)
importFrom(ggrepel,geom_label_repel)
importFrom(grDevices,colorRampPalette)
importFrom(graph,`nodeData<-`)
importFrom(graph,`nodeDataDefaults<-`)
importFrom(graph,addEdge)
importFrom(graph,edgeData)
importFrom(graph,edgeNames)
importFrom(graph,edges)
importFrom(graph,graphNEL)
importFrom(graph,nodeData)
importFrom(graph,nodeDataDefaults)
importFrom(graph,nodes)
importFrom(httr,HEAD)
importFrom(httr,POST)
importFrom(httr,content)
importFrom(httr,http_error)
importFrom(jsonlite,toJSON)
importFrom(limma,backgroundCorrect)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,normalizeBetweenArrays)
importFrom(limma,normalizeWithinArrays)
importFrom(limma,read.maimages)
importFrom(limma,topTable)
importFrom(methods,Summary)
importFrom(rlang,.data)
importFrom(rlang,interrupt)
importFrom(rlang,is_interactive)
importFrom(rlang,sym)
importFrom(scales,trans_new)
importFrom(stats,ks.test)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,phyper)
importFrom(stats,pnorm)
importFrom(stats,qnorm)
importFrom(stats,setNames)
importFrom(stats,weighted.mean)
importFrom(stats,wilcox.test)
importFrom(stringr,str_detect)
importFrom(stringr,str_length)
importFrom(stringr,str_match)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(stringr,str_split_1)
importFrom(stringr,str_starts)
importFrom(tidyr,drop_na)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(utils,URLdecode)
importFrom(utils,browseURL)
importFrom(utils,download.file)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,write.csv)
