R: Bayesian Modeling: Estimate a Computer Model and Make Uncertain Predictions

# Bayesian Modeling: Estimate a Computer Model and Make Uncertain Predictions

## Documentation for package ‘RBaM’ version 1.1.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

BaM | Run BaM
blocDiag | Bloc-diagonal matrix constructor
dataset | dataset object constructor.
densityPlot | densityPlot
downloadBaM | BaM downloader
getAwPfromBathy | Bathymetry interpreter
getCatalogue | BaM catalogue
getInitPar | Get initial values
getNames | Get object names
getParNames | Get parameter names
llfunk_iid_Gaussian | Log-likelihood function: iid Gaussian
llfunk_iLinear_Gaussian | Log-likelihood function: independent-linear Gaussian
logLikelihood_BaM | BaM log-likelihood
logPosterior_BaM | BaM log-posterior
logPosterior_BaM_wrapped | BaM log-posterior
logPrior_Flat | Log-prior function: improper flat prior
mcmcCooking | mcmcCooking constructor.
mcmcOptions | mcmcOptions object constructor.
mcmcSummary | mcmcSummary constructor.
MCMC_AM | Adaptive Metropolis sampler
MCMC_OAAT | Adaptive One-At-A-Time Metropolis sampler
MeyrasGaugings | Meyras Gaugings
model | model object constructor.
parameter | parameter object constructor.
parameter_VAR | Varying parameter object constructor.
prediction | prediction object constructor.
readMCMC | MCMC Reader
remnantErrorModel | remnantErrorModel object constructor.
residualOptions | residualOptions constructor.
runModel | Run Model
runOptions | runOptions constructor.
SauzeGaugings | Sauze Gaugings
setInitPar | Set initial values
setPathToBaM | Path to BaM
SPD_estimate | Estimation of a BaRatin-SPD model
SPD_getVARproperties | Properties of VAR parameters
toString.dataset | dataset to string
toString.mcmcCooking | mcmcCooking to string
toString.mcmcOptions | mcmcOptions to string
toString.mcmcSummary | mcmcSummary to string
toString.model | model to string
toString.parameter | parameter to string
toString.parameter_VAR | parameter_VAR to string
toString.prediction | prediction to string
toString.remnantErrorModel | remnantErrorModel to string
toString.residualOptions | residualOptions to string
toString.runOptions | runOptions to string
tracePlot | MCMC reporting
twoPopulations | Evolution of two populations
violinPlot | violinPlot
writePredInputs | Write prediction inputs
xtraModelInfo | xtraModelInfo constructor.