R: Ranking of Nodes with Kernelized Score Functions

# Ranking of Nodes with Kernelized Score Functions

## Documentation for package ‘RANKS’ version 1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

RANKS-package | RANKS: Ranking of Nodes with Kernelized Score Functions
cauchy.kernel | Kernel functions
compute.acc | Utility functions
compute.F | Utility functions
do.cv.data | Utility functions
do.GBA | GBA cross-validation experiments with multiple classes
do.loo.RANKS | RANKS leave-one-out experiments with multiple classes
do.RANKS | RANKS cross-validation experiments with multiple classes
do.RW | Random walk cross-validation experiments with multiple classes
do.RWR | Random walk with restart cross-validation experiments with multiple classes
do.stratified.cv.data | Utility functions
eav.score | Multiple vertex score functions
eav.score-method | Multiple vertex score functions
eav.score-methods | Multiple vertex score functions
eav.w.score | Multiple vertex score functions - weighted version
eav.w.score-method | Multiple vertex score functions - weighted version
eav.w.score-methods | Multiple vertex score functions - weighted version
find.optimal.thresh.cv | Function to find the optimal RANKS score thereshold
gaussian.kernel | Kernel functions
GBAmax | Guilt By Association (GBA) using the maximum rule
GBAsum | Guilt By Association (GBA) using the sum rule
identity.kernel | Kernel functions
inv.multiquadric.kernel | Kernel functions
ker.score.classifier.cv | Multiple cross-validation with RANKS for classification
ker.score.classifier.holdout | RANKS held-out procedure for a single class
ker.score.cv | RANKS cross-validation for a single class
ker.score.holdout | RANKS held-out procedure for a single class
Kernel functions | Kernel functions
KNN.score | Multiple vertex score functions
KNN.score-method | Multiple vertex score functions
KNN.score-methods | Multiple vertex score functions
KNN.w.score | Multiple vertex score functions - weighted version
KNN.w.score-method | Multiple vertex score functions - weighted version
KNN.w.score-methods | Multiple vertex score functions - weighted version
label.prop | Label propagation
labelsfromscores | Utility functions
laplacian.kernel | Kernel functions
linear.kernel | Kernel functions
Methods for scoring a single vertex | Single vertex score functions
Methods for scoring a single vertex - weighted version | Single vertex score functions - weighted version
Methods for scoring multiple vertices | Multiple vertex score functions
Methods for scoring multiple vertices - weighted version | Multiple vertex score functions - weighted version
multiple.ker.score.cv | RANKS multiple cross-validation for a single class
multiple.ker.score.thresh.cv | Function for RANKS multiple cross-validation and optimal threshold finding for a single class
Multiple.labels.from.scores | Utility functions
multiple.RW.cv | Random walk, GBA and labelprop multiple cross-validation for a single class
NN.score | Multiple vertex score functions
NN.score-method | Multiple vertex score functions
NN.score-methods | Multiple vertex score functions
NN.w.score | Multiple vertex score functions - weighted version
NN.w.score-method | Multiple vertex score functions - weighted version
NN.w.score-methods | Multiple vertex score functions - weighted version
norm1 | Utility functions
p.step.rw.kernel | Random walk kernel
p.step.rw.kernel-method | Random walk kernel
p.step.rw.kernel-methods | Random walk kernel
poly.kernel | Kernel functions
RANKS | RANKS: Ranking of Nodes with Kernelized Score Functions
RW | Random walk on a graph
RW.cv | Random walk, GBA and labelprop cross-validation for a single class
rw.kernel | Random walk kernel
rw.kernel-method | Random walk kernel
rw.kernel-methods | Random walk kernel
RWR | Random walk with Restart on a graph
selection.test | Utility functions
single.eav.score | Single vertex score functions
single.eav.score-method | Single vertex score functions
single.eav.score-methods | Single vertex score functions
single.eav.w.score | Single vertex score functions - weighted version
single.eav.w.score-method | Single vertex score functions - weighted version
single.eav.w.score-methods | Single vertex score functions - weighted version
single.KNN.score | Single vertex score functions
single.KNN.score-method | Single vertex score functions
single.KNN.score-methods | Single vertex score functions
single.KNN.w.score | Single vertex score functions - weighted version
single.KNN.w.score-method | Single vertex score functions - weighted version
single.KNN.w.score-methods | Single vertex score functions - weighted version
single.NN.score | Single vertex score functions
single.NN.score-method | Single vertex score functions
single.NN.score-methods | Single vertex score functions
single.NN.w.score | Single vertex score functions - weighted version
single.NN.w.score-method | Single vertex score functions - weighted version
single.NN.w.score-methods | Single vertex score functions - weighted version
single.WSLD.score | Single vertex score functions
single.WSLD.score-method | Single vertex score functions
single.WSLD.score-methods | Single vertex score functions
Unit.sphere.norm | Utility functions
WSLD.score | Multiple vertex score functions
WSLD.score-method | Multiple vertex score functions
WSLD.score-methods | Multiple vertex score functions