# Generated by roxygen2: do not edit by hand
useDynLib(RAINBOWR)

export(adjustGRM)
export(CalcThreshold)
export(calcGRM)
export(convertBlockList)
export(cumsumPos)
export(estPhylo)
export(estNetwork)
export(EM3.cov)
export(EM3.cpp)
export(EM3.linker.cpp)
export(EM3.general)
export(EMM.cpp)
export(EMM1.cpp)
export(EMM2.cpp)
export(is.diag)
export(MAF.cut)
export(RGWAS.epistasis)
export(RGWAS.multisnp)
export(RGWAS.multisnp.interaction)
export(RGWAS.normal)
export(RGWAS.normal.interaction)
export(RGWAS.twostep)
export(RGWAS.twostep.epi)
export(SS_gwas)
export(See)
export(design.Z)
export(genesetmap)
export(genetrait)
export(make.full)
export(manhattan)
export(manhattan.plus)
export(manhattan2)
export(manhattan3)
export(modify.data)
export(parallel.compute)
export(plotHaploNetwork)
export(plotPhyloTree)
export(qq)
export(score.calc)
export(score.calc.MC)
export(score.calc.int)
export(score.calc.int.MC)
export(score.calc.LR)
export(score.calc.LR.MC)
export(score.calc.LR.int)
export(score.calc.LR.int.MC)
export(score.calc.epistasis.LR)
export(score.calc.epistasis.LR.MC)
export(score.calc.epistasis.score)
export(score.calc.epistasis.score.MC)
export(score.calc.score)
export(score.calc.score.MC)
export(score.cpp)
export(score.linker.cpp)
export(spectralG.cpp)
export(welcome_to_RGWAS)
import(Rcpp)
import(pbmcapply)
import(optimx)
import(stringr)
importFrom("grDevices", "dev.cur", "dev.new", "dev.next", "dev.off",
            "dev.set", "png", "rainbow")
importFrom("graphics", "axis", "boxplot", "legend", "lines", "par",
            "plot", "points", "segments", "text", "title")
importFrom("methods", "getPackageName", "as")
importFrom("stats", "cor", "deviance", "dist", "dnorm", "median",
           "model.matrix", "nlminb", "optim", "optimize", "pbeta",
           "pchisq", "ppoints", "predict", "qchisq", "quantile",
           "rnorm", "sd", "smooth.spline", "var")
importFrom("utils", "menu", "packageVersion", "setTxtProgressBar",
           "str", "txtProgressBar", "head", "flush.console",
           "read.csv", "combn")
importFrom("grDevices", "jpeg", "pdf", "tiff")
importFrom("stats", "as.dist", "chisq.test", "cutree",
           "hclust", "kmeans", "cmdscale")
importFrom("Matrix", "sparseMatrix")
importFrom("MASS", "mvrnorm", "ginv")
importFrom("pegas", "mst", "msn", "rmst")
importFrom("cluster", "pam")
importFrom("ape", "nj", "dist.nodes", "plot.phylo", "nodelabels", "tiplabels")
importFrom("rrBLUP", "A.mat")
importFrom("expm", "expm")
importFrom("here", "here")
importFrom("htmlwidgets", "saveWidget")
importFrom("Rfast", "Dist")
importFrom("gaston", "lmm.aireml", "lmm.diago")
importFrom("MM4LMM", "MMEst")
importFrom("stats", "prcomp")
importFrom("parallel", "mclapply", "detectCores")
importFrom("R.utils", "extract")
