R: Optimize the De Novo Stacks Pipeline via R

# Optimize the De Novo Stacks Pipeline via R

## Documentation for package ‘RADstackshelpR’ version 0.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

optimize_bigM | Optimize the M parameter during denovo stacks assembly
optimize_m | Optimize the m parameter during denovo stacks assembly
optimize_n | Optimize the n parameter during denovo stacks assembly
vis_depth | Visualize the effect of varying the m parameter on the mean depth of each sample
vis_loci | Visualize the effect of varying a stacks parameter on the number of polymorphic loci retained
vis_snps | Visualize the effect of varying a stacks parameter on the number of SNPs retained