Package: PopVar
Title: Genomic Breeding Tools: Genetic Variance Prediction and
        Cross-Validation
Version: 1.3.2
Authors@R: 
    c(person(given = "Tyler",
           family = "Tiede",
           role = c("aut"),
           email = "tyler.tiede7@gmail.com"),
      person(given = "Jeffrey",
             family = "Neyhart",
             role = c("aut", "ctb", "cre"),
             email = "neyhartje@gmail.com",
             comment = c(ORCID = "0000-0002-1991-5310")),
      person(given = "Mohsen",
             family = "Mohammadi",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-4536-1200")),
      person(given = "Kevin",
             family = "Smith",
             role = c("ctb"),
             comment = c(ORCID = "0000-0001-8253-3326")))
Description: The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, 
    from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic
    data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, 
    or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction 
    accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>). 
    A dataset 'think_barley.rda' is included for reference and examples.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
URL: https://github.com/UMN-BarleyOatSilphium/PopVar
Depends: R (>= 3.5.0)
Imports: BGLR, qtl, rrBLUP, stats, utils, methods, parallel
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
BugReports: https://github.com/UMN-BarleyOatSilphium/PopVar/issues
NeedsCompilation: no
Packaged: 2024-10-20 14:13:00 UTC; jeffneyhart
Author: Tyler Tiede [aut],
  Jeffrey Neyhart [aut, ctb, cre]
    (<https://orcid.org/0000-0002-1991-5310>),
  Mohsen Mohammadi [ctb] (<https://orcid.org/0000-0002-4536-1200>),
  Kevin Smith [ctb] (<https://orcid.org/0000-0001-8253-3326>)
Maintainer: Jeffrey Neyhart <neyhartje@gmail.com>
Repository: CRAN
Date/Publication: 2024-10-20 22:40:07 UTC
Built: R 4.6.0; ; 2026-04-27 00:21:57 UTC; unix
