# Generated by roxygen2: do not edit by hand

S3method(coef,PLNLDAfit)
S3method(coef,PLNfit)
S3method(coef,PLNmixturefit)
S3method(coef,ZIPLNfit)
S3method(fitted,PLNfit)
S3method(fitted,PLNmixturefit)
S3method(fitted,ZIPLNfit)
S3method(getBestModel,Networkfamily)
S3method(getBestModel,PLNPCAfamily)
S3method(getBestModel,PLNmixturefamily)
S3method(getBestModel,PLNnetworkfamily)
S3method(getBestModel,ZIPLNnetworkfamily)
S3method(getModel,Networkfamily)
S3method(getModel,PLNPCAfamily)
S3method(getModel,PLNmixturefamily)
S3method(getModel,PLNnetworkfamily)
S3method(getModel,ZIPLNnetworkfamily)
S3method(plot,Networkfamily)
S3method(plot,PLNLDAfit)
S3method(plot,PLNPCAfamily)
S3method(plot,PLNPCAfit)
S3method(plot,PLNfamily)
S3method(plot,PLNmixturefamily)
S3method(plot,PLNmixturefit)
S3method(plot,PLNnetworkfamily)
S3method(plot,PLNnetworkfit)
S3method(plot,ZIPLNfit_sparse)
S3method(plot,ZIPLNnetworkfamily)
S3method(predict,PLNLDAfit)
S3method(predict,PLNfit)
S3method(predict,PLNmixturefit)
S3method(predict,ZIPLNfit)
S3method(predict_cond,PLNfit)
S3method(sigma,PLNfit)
S3method(sigma,PLNmixturefit)
S3method(sigma,ZIPLNfit)
S3method(standard_error,PLNPCAfit)
S3method(standard_error,PLNfit)
S3method(standard_error,PLNfit_fixedcov)
S3method(standard_error,PLNmixturefit)
S3method(standard_error,PLNnetworkfit)
S3method(vcov,PLNfit)
export("%>%")
export(PLN)
export(PLNLDA)
export(PLNLDA_param)
export(PLNPCA)
export(PLNPCA_param)
export(PLN_param)
export(PLNmixture)
export(PLNmixture_param)
export(PLNnetwork)
export(PLNnetwork_param)
export(ZIPLN)
export(ZIPLN_param)
export(ZIPLNnetwork)
export(ZIPLNnetwork_param)
export(coefficient_path)
export(compute_PLN_starting_point)
export(compute_offset)
export(extract_probs)
export(getBestModel)
export(getModel)
export(predict_cond)
export(prepare_data)
export(rPLN)
export(stability_selection)
export(standard_error)
import(Matrix)
import(R6)
import(dplyr)
import(future)
import(ggplot2)
import(magrittr)
import(methods)
import(nloptr)
import(parallel)
import(torch)
importFrom(MASS,mvrnorm)
importFrom(Matrix,Matrix)
importFrom(R6,R6Class)
importFrom(Rcpp,sourceCpp)
importFrom(corrplot,corrplot)
importFrom(future.apply,future_lapply)
importFrom(future.apply,future_sapply)
importFrom(glassoFast,glassoFast)
importFrom(grDevices,rgb)
importFrom(grid,nullGrob)
importFrom(grid,textGrob)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,degree)
importFrom(igraph,delete.vertices)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,layout_in_circle)
importFrom(igraph,plot.igraph)
importFrom(magrittr,"%>%")
importFrom(pscl,zeroinfl)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map2_dbl)
importFrom(purrr,map_dbl)
importFrom(purrr,map_int)
importFrom(purrr,reduce)
importFrom(rlang,.data)
importFrom(scales,alpha)
importFrom(stats,.getXlevels)
importFrom(stats,.lm.fit)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,coefficients)
importFrom(stats,fitted)
importFrom(stats,glm.control)
importFrom(stats,glm.fit)
importFrom(stats,lm.fit)
importFrom(stats,lm.wfit)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,model.frame)
importFrom(stats,model.matrix)
importFrom(stats,model.offset)
importFrom(stats,model.response)
importFrom(stats,model.weights)
importFrom(stats,poisson)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(stats,sigma)
importFrom(stats,terms)
importFrom(stats,update.formula)
importFrom(stats,var)
importFrom(tidyr,gather)
importFrom(tidyr,replace_na)
useDynLib(PLNmodels)
