R: Multivariate Analysis of Variance Based on Distances and Permutations

# Multivariate Analysis of Variance Based on Distances and Permutations

## Documentation for package ‘PERMANOVA’ version 0.2.0

- DESCRIPTION file

## Help Pages

AddClusterToBiplot | Add Clusters to a Biplot Object
BinaryVectorCheck | Checks if a vector is binary
BiplotVar | Draws a variable on a biplot
BootDisMANOVA | Multivariate Analysis of Variance based on Distances and Bootstrap
BootDistCanonicalAnalysis | Canonical Analysis based on Distances
Circle2 | Draws a circle.
ConcEllipse | Non-parametric concentration ellipses
ConstructContrasts | Construction of contrasts for several factors
Cumsum | Cumulative sums
DistBinary | Distances for binary data
DistContinuous | Distances among individuals with continuous data
Dlines | Connects two sets of points by lines
FactorToBinary | Converts a Factor into its indicator matrix
GetScalesBiplot | Calculates the scales for the variables on a linear biplot
Ginv | G inverse
inbox | Checks if a point is inside a box
IniTransform | Initial transformation of a data matrix
MANOVA | Multivariate Analysis of Variance (MANOVA)
MANOVA.Estimation | Estimation of the MANOVA parameters.
mgc | Mixture Gaussian Clustering
Ones | Matrix of ones
PERMANOVA | PERMANOVA: MANOVA based on distances
PERMANOVA.Estimation | Estimation of the PERMANOVA parameters
PerMANOVA.Simple | PERMANOVA from a matrix of distancies
plot.BootCanonAnalysis | Plots the principal coordinates of the group centers and the bootstrap confidence regions
plot.ellipse | Plot a concentration ellipse
plot.MANOVA | Plots the results of a MANOVA Biplot
plot.MANOVA.Biplot | Plots the results of a MANOVA Biplot
plot.PERMANOVA | Plots the results of the PERMANOVA function
PlotClustersBiplot | Plot clusters on a biplot.
PostHocComp | Post Hoc pairwise comparisons
ProcrustesSimple | Simple Procrustes Analysis
spiders | Hunting Spiders Data
spidersb | Hunting Spiders Data
summary.BootDisMANOVA | Summarizes the results of a Bootstrap Manova based on distances
TextSmart | Labels of a Scatter
wine | Wine data
Zeros | Matrix of zeros