R: Protracted Birth-Death Model of Diversification

# Protracted Birth-Death Model of Diversification

## Documentation for package ‘PBD’ version 1.4

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

PBD-package | Protracted Birth-Death Model of Diversification
PBD | Protracted Birth-Death Model of Diversification
pbd_bootstrap | Bootstrap analysis under protracted birth-death model of diversification
pbd_brts_density | Node depth probbaility density for protracted birth-death model of diversification
pbd_durspec_cumdensity | Cumulative density of duration of speciation under protracted birth-death model of diversification
pbd_durspec_density | Probability density for duration of speciation under protracted birth-death model of diversification
pbd_durspec_mean | Mean duration of speciation under protracted birth-death model of diversification
pbd_durspec_mode | mode of the duration of speciation under protracted birth-death model of diversification
pbd_durspec_moment | Moments of duration of speciation under protracted birth-death model of diversification
pbd_durspec_quantile | Quantiles of duration of speciation under protracted birth-death model of diversification
pbd_durspec_var | Variance in duration of speciation under protracted birth-death model of diversification
pbd_loglik | Loglikelihood for protracted birth-death model of diversification
pbd_LR | Bootstrap likelihood ratio test of protracted birth-death model of diversification
pbd_ML | Maximization of loglikelihood under protracted birth-death model of diversification
pbd_sim | Function to simulate the protracted speciation process
pbd_sim_cpp | Function to simulate the approximate protracted speciation process