FM.chi.pvalue           Calculates the Fisher's method p-value for each
                        tested pathway
NBF                     Normal/Bayes factors method for finding
                        associated pathways
PAGWAS-package          Pathway Analysis Methods for Genomewide
                        Association Data
SNAL                    Sparse Normal/Adaptive lasso method for finding
                        associated pathways
SNAL.calculation        Sparse Normal/Adaptive lasso method for finding
                        associated variables. The SNAL method is
                        applied to the linear regression Y= Phi beta +
                        epsilon
SNPs                    A data frame of 100 artificial SNPs with their
                        chromosomes and positions on the genome
create.pathway.df       Creates a pathway data frame
genes                   A data frame of 20 artificial genes with their
                        chromosomes and positions on the genome
genotypes               Genotypes for 100 SNPs and 75 individuals
pathways                A list of 2 pathways with their gene members
snps.to.genes           Assigns SNPs to genes
snps.to.pathways        Assigns SNPs to pathways
