R: Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis

# Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis

## Documentation for package ‘NetworkToolbox’ version 1.4.4

- DESCRIPTION file
- Package NEWS

## Help Pages

NetworkToolbox-package | NetworkToolbox-package
adapt.a | Adaptive Alpha
behavOpen | NEO-PI-3 for Resting-state Data
betweenness | Betweenness Centrality
binarize | Binarize Network
closeness | Closeness Centrality
clustcoeff | Clustering Coefficient
comcat | Communicating Nodes
comm.close | Community Closeness Centrality
comm.eigen | Community Eigenvector Centrality
comm.str | Community Strength/Degree Centrality
conn | Network Connectivity
convert2igraph | Convert Network(s) to igraph's Format
convertConnBrainMat | Import CONN Toolbox Brain Matrices to R format
cor2cov | Convert Correlation Matrix to Covariance Matrix
core.items | Core Items
cpm | Connectome-based Predictive Modeling
cpmEV | Connectome-based Predictive Modeling
cpmFP | Connectome-based Predictive Modeling
cpmFPperm | Connectome-based Predictive Modeling
cpmIV | Connectome-based Predictive Modeling
cpmIVperm | Connectome-based Predictive Modeling
cpmPlot | Connectome-based Predictive Modeling
dCor | Distance Correlation for ROI Time Series
dCor.parallel | Parallelization of Distance Correlation for ROI Time Series
degree | Degree
depend | Dependency Network Approach
depna | Dependency Neural Networks
desc | Variable Descriptive Statistics
desc.all | Dataset Descriptive Statistics
distance | Distance
diversity | Diversity Coefficient
ECO | ECO Neural Network Filter
ECOplusMaST | ECO+MaST Network Filter
edgerep | Edge Replication
eigenvector | Eigenvector Centrality
flow.frac | Flow Fraction
gain.functions | MFCF Gain Functions
gateway | Gateway Coefficient
gdcnv_lmfit | MFCF Gain Functions
gfcnv_logdet | MFCF Gain Functions
gfcnv_logdet_val | MFCF Gain Functions
hybrid | Hybrid Centrality
impact | Node Impact
is.graphical | Determines if Network is Graphical
kld | Kullback-Leibler Divergence
lattnet | Generates a Lattice Network
leverage | Leverage Centrality
LoGo | Local/Global Inversion Method
louvain | Louvain Community Detection Algorithm
MaST | Maximum Spanning Tree
MFCF | Maximally Filtered Clique Forest
neoOpen | NEO-PI-3 Openness to Experience Data
net.coverage | Network Coverage
network.coverage | Network Coverage
network.permutation | Permutation Test for Network Measures
NetworkToolbox | NetworkToolbox-package
neuralnetfilter | Neural Network Filter
openness | Four Inventories of Openness to Experience
openness.key | Four Inventories of Openness to Experience
participation | Participation Coefficient
pathlengths | Characteristic Path Lengths
plot.cpm | Plots CPM results
randnet | Generates a Random Network
reg | Regression Matrix
resp.rep | Repeated Responses Check
rmse | Root Mean Square Error
rspbc | Randomized Shortest Paths Betweenness Centrality
sim.chordal | Simulate Chordal Network
sim.swn | Simulate Small-world Network
smallworldness | Small-worldness Measure
stable | Stabilizing Nodes
strength | Node Strength
threshold | Threshold Network Estimation Methods
TMFG | Triangulated Maximally Filtered Graph
transitivity | Transitivity
un.direct | Convert Directed Network to Undirected Network